Mercurial > repos > iuc > scanpy_remove_confounders
changeset 14:c65fce500915 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 9d49b2a98de059ae9a053dc1c5a23537cf0311de
| author | iuc |
|---|---|
| date | Sat, 18 May 2024 18:30:17 +0000 |
| parents | d18e7a6e5cd4 |
| children | e66884b1c1a5 |
| files | macros.xml remove_confounders.xml |
| diffstat | 2 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/macros.xml Thu Mar 14 15:38:16 2024 +0000 +++ b/macros.xml Sat May 18 18:30:17 2024 +0000 @@ -1,7 +1,7 @@ <macros> <token name="@TOOL_VERSION@">1.9.6</token> - <token name="@VERSION_SUFFIX@">2</token> - <token name="@profile@">22.05</token> + <token name="@VERSION_SUFFIX@">3</token> + <token name="@profile@">21.09</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">scanpy</requirement>
--- a/remove_confounders.xml Thu Mar 14 15:38:16 2024 +0000 +++ b/remove_confounders.xml Sat May 18 18:30:17 2024 +0000 @@ -180,7 +180,7 @@ inspired by Seurat's `regressOut` function in R. More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.regress_out.html>`__ +<https://scanpy.readthedocs.io/en/stable/api/scanpy.pp.regress_out.html>`__ Correct batch effects by matching mutual nearest neighbors, using `pp.mnn_correct` ================================================================================== @@ -200,7 +200,7 @@ Corrects for batch effects by fitting linear models, gains statistical power via an EB framework where information is borrowed across genes. This uses the implementation of ComBat More details on the `scanpy documentation -<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.combat.html>`__ +<https://scanpy.readthedocs.io/en/stable/api/generated/scanpy.pp.combat.html>`__ ]]></help>