annotate scHicMergeMatrixBins.xml @ 2:47ef02546fe9 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit d350f8e73ae518245a21f9720f8282f06eb9cc5d
author iuc
date Fri, 14 Apr 2023 14:24:20 +0000
parents ecae4e42d40a
children
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47ef02546fe9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit d350f8e73ae518245a21f9720f8282f06eb9cc5d
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1 <tool id="schicexplorer_schicmergematrixbins" name="@BINARY@" version="@TOOL_VERSION@.1" profile="@PROFILE@">
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2 <description>change the resolution of the scHi-C matrices</description>
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3 <macros>
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4 <token name="@BINARY@">scHicMergeMatrixBins</token>
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5 <import>macros.xml</import>
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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6 </macros>
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7 <expand macro="requirements" />
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8 <command detect_errors="exit_code"><![CDATA[
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9 @BINARY@
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10
1
ecae4e42d40a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 72e1e90ac05a32dbd6fc675073429c0086048b18"
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11 --matrix '$matrix_scooler'
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12 --numBins $numberOfBins
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13
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14 #if $runningWindow:
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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15 $runningWindow
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16 #end if
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17
1
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18 --outFileName merged_matrices.scool
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19
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20 --threads @THREADS@
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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21
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22
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23
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24 ]]></command>
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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25 <inputs>
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26
1
ecae4e42d40a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 72e1e90ac05a32dbd6fc675073429c0086048b18"
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27 <expand macro="matrix_scooler_macro"/>
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28 <param name="numberOfBins" type="integer" value="10" label="Number of bins to merge" help='Number of bins to merge to achieve the desired resolution. For example: To merge a 10kb matrix to 1MB, 10kb * 100 = 1MB i.e. the value needs to be 100.' />
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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29 <param name='runningWindow' type='boolean' truevalue='--runningWindow' label='Running window' help='Set to merge for using a running window of length --numBins. Must be an odd number.'/>
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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30
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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31 </inputs>
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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32 <outputs>
1
ecae4e42d40a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 72e1e90ac05a32dbd6fc675073429c0086048b18"
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33 <data name="outFileName" from_work_dir="merged_matrices.scool" format="scool" label="${tool.name} on ${on_string}: Merged matrix"/>
0
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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34 </outputs>
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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35 <tests>
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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36 <test>
1
ecae4e42d40a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 72e1e90ac05a32dbd6fc675073429c0086048b18"
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37 <param name='matrix_scooler' value='test_matrix.scool' />
0
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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38 <param name='numberOfBins' value='10' />
1
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39 <output name="outFileName" ftype="scool">
0
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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40 <assert_contents>
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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41 <has_h5_keys keys='Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/bins,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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42 Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/bins/chrom, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/bins/end,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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43 Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/bins/start, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/chroms,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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44 Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/chroms/length, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/chroms/name,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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45 Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/indexes, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/indexes/bin1_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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46 Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/indexes/chrom_offset, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/pixels,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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47 Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/pixels/bin1_id, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/pixels/bin2_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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48 Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/pixels/count, Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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49 Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/bins, Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/bins/chrom,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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50 Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/bins/end, Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/bins/start,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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51 Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/chroms, Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/chroms/length,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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52 Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/chroms/name, Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/indexes,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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53 Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/indexes/bin1_offset, Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/indexes/chrom_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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54 Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/pixels, Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/pixels/bin1_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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55 Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/pixels/bin2_id, Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/pixels/count,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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56 Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz, Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/bins,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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57 Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/bins/chrom, Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/bins/end,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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58 Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/bins/start, Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/chroms,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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59 Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/chroms/length, Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/chroms/name,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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60 Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/indexes, Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/indexes/bin1_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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61 Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/indexes/chrom_offset, Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/pixels,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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62 Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/pixels/bin1_id, Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/pixels/bin2_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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63 Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/pixels/count, Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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64 Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/bins, Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/bins/chrom,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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65 Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/bins/end, Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/bins/start,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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66 Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/chroms, Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/chroms/length,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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67 Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/chroms/name, Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/indexes,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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68 Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/indexes/bin1_offset, Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/indexes/chrom_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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69 Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/pixels, Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/pixels/bin1_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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70 Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/pixels/bin2_id, Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/pixels/count,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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diff changeset
71 Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz, Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/bins,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
72 Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/bins/chrom, Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/bins/end,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
73 Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/bins/start, Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/chroms,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
74 Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/chroms/length, Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/chroms/name,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
75 Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/indexes, Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/indexes/bin1_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
76 Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/indexes/chrom_offset, Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/pixels,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
77 Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/pixels/bin1_id, Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/pixels/bin2_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
78 Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/pixels/count, Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
79 Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/bins, Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/bins/chrom,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
80 Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/bins/end, Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/bins/start,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
81 Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/chroms, Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/chroms/length,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
82 Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/chroms/name, Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/indexes,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
83 Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/indexes/bin1_offset, Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/indexes/chrom_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
84 Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/pixels, Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/pixels/bin1_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
85 Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/pixels/bin2_id, Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/pixels/count,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
86 Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz, Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/bins, Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/bins/chrom,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
87 Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/bins/end, Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/bins/start,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
88 Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/chroms, Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/chroms/length,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
89 Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/chroms/name, Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/indexes,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
90 Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/indexes/bin1_offset, Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/indexes/chrom_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
91 Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/pixels, Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/pixels/bin1_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
92 Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/pixels/bin2_id, Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/pixels/count,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
93 Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz, Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/bins, Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/bins/chrom,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
94 Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/bins/end, Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/bins/start,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
95 Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/chroms, Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/chroms/length,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
96 Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/chroms/name, Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/indexes,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
97 Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/indexes/bin1_offset, Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/indexes/chrom_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
98 Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/pixels, Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/pixels/bin1_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
99 Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/pixels/bin2_id, Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/pixels/count,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
100 Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz, Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/bins, Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/bins/chrom,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
101 Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/bins/end, Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/bins/start,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
102 Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/chroms, Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/chroms/length,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
103 Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/chroms/name, Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/indexes,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
104 Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/indexes/bin1_offset, Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/indexes/chrom_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
105 Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/pixels, Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/pixels/bin1_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
106 Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/pixels/bin2_id, Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/pixels/count,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
107 Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz, Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/bins,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
108 Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/bins/chrom, Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/bins/end,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
109 Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/bins/start, Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/chroms,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
110 Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/chroms/length, Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/chroms/name,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
111 Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/indexes, Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/indexes/bin1_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
112 Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/indexes/chrom_offset, Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/pixels,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
113 Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/pixels/bin1_id, Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/pixels/bin2_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
114 Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/pixels/count, Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
115 Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/bins, Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/bins/chrom,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
116 Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/bins/end, Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/bins/start,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
117 Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/chroms, Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/chroms/length,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
118 Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/chroms/name, Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/indexes,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
119 Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/indexes/bin1_offset, Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/indexes/chrom_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
120 Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/pixels, Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/pixels/bin1_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
121 Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/pixels/bin2_id, Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/pixels/count,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
122 Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz, Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/bins,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
123 Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/bins/chrom, Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/bins/end,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
124 Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/bins/start, Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/chroms,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
125 Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/chroms/length, Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/chroms/name,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
126 Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/indexes, Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/indexes/bin1_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
127 Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/indexes/chrom_offset, Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/pixels,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
128 Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/pixels/bin1_id, Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/pixels/bin2_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
129 Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/pixels/count, Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
130 Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/bins, Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/bins/chrom,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
131 Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/bins/end, Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/bins/start,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
132 Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/chroms, Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/chroms/length,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
133 Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/chroms/name, Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/indexes,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
134 Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/indexes/bin1_offset, Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/indexes/chrom_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
135 Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/pixels, Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/pixels/bin1_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
136 Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/pixels/bin2_id, Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/pixels/count,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
137 Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz, Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/bins,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
138 Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/bins/chrom, Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/bins/end,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
139 Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/bins/start, Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/chroms,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
140 Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/chroms/length, Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/chroms/name,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
141 Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/indexes, Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/indexes/bin1_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
142 Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/indexes/chrom_offset, Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/pixels,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
143 Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/pixels/bin1_id, Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/pixels/bin2_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
144 Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/pixels/count, Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
145 Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/bins, Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/bins/chrom,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
146 Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/bins/end, Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/bins/start,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
147 Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/chroms, Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/chroms/length,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
148 Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/chroms/name, Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/indexes,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
149 Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/indexes/bin1_offset, Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/indexes/chrom_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
150 Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/pixels, Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/pixels/bin1_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
151 Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/pixels/bin2_id, Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/pixels/count,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
152 Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz, Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/bins,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
153 Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/bins/chrom, Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/bins/end,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
154 Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/bins/start, Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/chroms,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
155 Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/chroms/length, Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/chroms/name,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
156 Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/indexes, Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/indexes/bin1_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
157 Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/indexes/chrom_offset, Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/pixels,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
158 Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/pixels/bin1_id, Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/pixels/bin2_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
159 Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/pixels/count, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
160 Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/bins, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/bins/chrom,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
161 Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/bins/end, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/bins/start,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
162 Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/chroms, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/chroms/length,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
163 Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/chroms/name, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/indexes,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
164 Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/indexes/bin1_offset, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/indexes/chrom_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
165 Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/pixels, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/pixels/bin1_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
166 Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/pixels/bin2_id, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/pixels/count,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
167 Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/bins,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
168 Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/bins/chrom, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/bins/end,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
169 Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/bins/start, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/chroms,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
170 Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/chroms/length, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/chroms/name,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
171 Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/indexes, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/indexes/bin1_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
172 Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/indexes/chrom_offset, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/pixels,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
173 Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/pixels/bin1_id, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/pixels/bin2_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
174 Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/pixels/count, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
175 Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/bins, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/bins/chrom,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
176 Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/bins/end, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/bins/start,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
177 Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/chroms, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/chroms/length,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
178 Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/chroms/name, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/indexes,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
179 Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/indexes/bin1_offset, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/indexes/chrom_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
180 Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/pixels, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/pixels/bin1_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
181 Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/pixels/bin2_id, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/pixels/count,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
182 Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/bins,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
183 Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/bins/chrom, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/bins/end,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
184 Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/bins/start, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/chroms,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
185 Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/chroms/length, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/chroms/name,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
186 Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/indexes, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/indexes/bin1_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
187 Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/indexes/chrom_offset, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/pixels,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
188 Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/pixels/bin1_id, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/pixels/bin2_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
189 Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/pixels/count'/>
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
190 </assert_contents>
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
191 </output>
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
192 </test>
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
193 <test>
1
ecae4e42d40a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 72e1e90ac05a32dbd6fc675073429c0086048b18"
iuc
parents: 0
diff changeset
194 <param name='matrix_scooler' value='test_matrix.scool' />
0
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
195 <param name='numberOfBins' value='11' />
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
196 <param name='runningWindow' value='true' />
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
197
1
ecae4e42d40a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 72e1e90ac05a32dbd6fc675073429c0086048b18"
iuc
parents: 0
diff changeset
198 <output name="outFileName" ftype="scool">
0
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
199 <assert_contents>
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
200 <has_h5_keys keys='Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/bins,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
201 Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/bins/chrom, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/bins/end,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
202 Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/bins/start, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/chroms,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
203 Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/chroms/length, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/chroms/name,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
204 Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/indexes, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/indexes/bin1_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
205 Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/indexes/chrom_offset, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/pixels,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
206 Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/pixels/bin1_id, Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/pixels/bin2_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
207 Diploid_1_CGTACTAG_AAGGAGTA_R1fastqgz/pixels/count, Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
208 Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/bins, Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/bins/chrom,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
209 Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/bins/end, Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/bins/start,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
210 Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/chroms, Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/chroms/length,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
211 Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/chroms/name, Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/indexes,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
212 Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/indexes/bin1_offset, Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/indexes/chrom_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
213 Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/pixels, Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/pixels/bin1_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
214 Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/pixels/bin2_id, Diploid_1_CGTACTAG_ACTGCATA_R1fastqgz/pixels/count,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
215 Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz, Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/bins,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
216 Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/bins/chrom, Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/bins/end,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
217 Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/bins/start, Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/chroms,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
218 Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/chroms/length, Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/chroms/name,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
219 Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/indexes, Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/indexes/bin1_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
220 Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/indexes/chrom_offset, Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/pixels,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
221 Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/pixels/bin1_id, Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/pixels/bin2_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
222 Diploid_1_CGTACTAG_CGTCTAAT_R1fastqgz/pixels/count, Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
223 Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/bins, Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/bins/chrom,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
224 Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/bins/end, Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/bins/start,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
225 Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/chroms, Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/chroms/length,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
226 Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/chroms/name, Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/indexes,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
227 Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/indexes/bin1_offset, Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/indexes/chrom_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
228 Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/pixels, Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/pixels/bin1_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
229 Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/pixels/bin2_id, Diploid_1_CGTACTAG_CTAAGCCT_R1fastqgz/pixels/count,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
230 Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz, Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/bins,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
231 Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/bins/chrom, Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/bins/end,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
232 Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/bins/start, Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/chroms,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
233 Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/chroms/length, Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/chroms/name,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
234 Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/indexes, Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/indexes/bin1_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
235 Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/indexes/chrom_offset, Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/pixels,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
236 Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/pixels/bin1_id, Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/pixels/bin2_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
237 Diploid_1_CGTACTAG_CTCTCTAT_R1fastqgz/pixels/count, Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
238 Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/bins, Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/bins/chrom,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
239 Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/bins/end, Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/bins/start,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
240 Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/chroms, Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/chroms/length,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
241 Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/chroms/name, Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/indexes,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
242 Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/indexes/bin1_offset, Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/indexes/chrom_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
243 Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/pixels, Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/pixels/bin1_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
244 Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/pixels/bin2_id, Diploid_1_CGTACTAG_GTAAGGAG_R1fastqgz/pixels/count,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
245 Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz, Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/bins, Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/bins/chrom,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
246 Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/bins/end, Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/bins/start,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
247 Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/chroms, Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/chroms/length,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
248 Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/chroms/name, Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/indexes,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
249 Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/indexes/bin1_offset, Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/indexes/chrom_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
250 Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/pixels, Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/pixels/bin1_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
251 Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/pixels/bin2_id, Diploid_1_CGTACTAG_TATCCTCT_R1fastqgz/pixels/count,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
252 Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz, Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/bins, Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/bins/chrom,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
253 Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/bins/end, Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/bins/start,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
254 Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/chroms, Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/chroms/length,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
255 Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/chroms/name, Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/indexes,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
256 Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/indexes/bin1_offset, Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/indexes/chrom_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
257 Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/pixels, Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/pixels/bin1_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
258 Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/pixels/bin2_id, Diploid_1_CGTACTAG_TCTCTCCG_R1fastqgz/pixels/count,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
259 Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz, Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/bins, Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/bins/chrom,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
260 Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/bins/end, Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/bins/start,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
261 Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/chroms, Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/chroms/length,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
262 Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/chroms/name, Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/indexes,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
263 Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/indexes/bin1_offset, Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/indexes/chrom_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
264 Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/pixels, Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/pixels/bin1_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
265 Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/pixels/bin2_id, Diploid_1_TAAGGCGA_AAGGAGTA_R1fastqgz/pixels/count,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
266 Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz, Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/bins,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
267 Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/bins/chrom, Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/bins/end,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
268 Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/bins/start, Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/chroms,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
269 Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/chroms/length, Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/chroms/name,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
270 Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/indexes, Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/indexes/bin1_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
271 Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/indexes/chrom_offset, Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/pixels,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
272 Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/pixels/bin1_id, Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/pixels/bin2_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
273 Diploid_1_TAAGGCGA_CGTCTAAT_R1fastqgz/pixels/count, Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
274 Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/bins, Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/bins/chrom,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
275 Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/bins/end, Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/bins/start,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
276 Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/chroms, Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/chroms/length,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
277 Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/chroms/name, Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/indexes,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
278 Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/indexes/bin1_offset, Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/indexes/chrom_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
279 Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/pixels, Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/pixels/bin1_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
280 Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/pixels/bin2_id, Diploid_1_TAAGGCGA_CTAAGCCT_R1fastqgz/pixels/count,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
281 Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz, Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/bins,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
282 Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/bins/chrom, Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/bins/end,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
283 Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/bins/start, Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/chroms,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
284 Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/chroms/length, Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/chroms/name,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
285 Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/indexes, Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/indexes/bin1_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
286 Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/indexes/chrom_offset, Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/pixels,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
287 Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/pixels/bin1_id, Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/pixels/bin2_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
288 Diploid_2_AAGAGGCA_AAGGAGTA_R1fastqgz/pixels/count, Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
289 Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/bins, Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/bins/chrom,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
290 Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/bins/end, Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/bins/start,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
291 Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/chroms, Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/chroms/length,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
292 Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/chroms/name, Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/indexes,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
293 Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/indexes/bin1_offset, Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/indexes/chrom_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
294 Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/pixels, Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/pixels/bin1_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
295 Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/pixels/bin2_id, Diploid_2_AAGAGGCA_ACTGCATA_R1fastqgz/pixels/count,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
296 Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz, Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/bins,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
297 Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/bins/chrom, Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/bins/end,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
298 Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/bins/start, Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/chroms,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
299 Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/chroms/length, Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/chroms/name,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
300 Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/indexes, Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/indexes/bin1_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
301 Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/indexes/chrom_offset, Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/pixels,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
302 Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/pixels/bin1_id, Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/pixels/bin2_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
303 Diploid_2_AAGAGGCA_CGTCTAAT_R1fastqgz/pixels/count, Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
304 Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/bins, Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/bins/chrom,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
305 Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/bins/end, Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/bins/start,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
306 Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/chroms, Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/chroms/length,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
307 Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/chroms/name, Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/indexes,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
308 Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/indexes/bin1_offset, Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/indexes/chrom_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
309 Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/pixels, Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/pixels/bin1_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
310 Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/pixels/bin2_id, Diploid_2_AAGAGGCA_CTAAGCCT_R1fastqgz/pixels/count,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
311 Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz, Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/bins,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
iuc
parents:
diff changeset
312 Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/bins/chrom, Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/bins/end,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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313 Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/bins/start, Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/chroms,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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314 Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/chroms/length, Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/chroms/name,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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315 Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/indexes, Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/indexes/bin1_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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316 Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/indexes/chrom_offset, Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/pixels,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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317 Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/pixels/bin1_id, Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/pixels/bin2_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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318 Diploid_2_AAGAGGCA_CTCTCTAT_R1fastqgz/pixels/count, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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319 Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/bins, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/bins/chrom,
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320 Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/bins/end, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/bins/start,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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321 Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/chroms, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/chroms/length,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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322 Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/chroms/name, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/indexes,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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323 Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/indexes/bin1_offset, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/indexes/chrom_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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324 Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/pixels, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/pixels/bin1_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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325 Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/pixels/bin2_id, Diploid_2_AAGAGGCA_GTAAGGAG_R1fastqgz/pixels/count,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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326 Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/bins,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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327 Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/bins/chrom, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/bins/end,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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328 Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/bins/start, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/chroms,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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329 Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/chroms/length, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/chroms/name,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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330 Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/indexes, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/indexes/bin1_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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331 Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/indexes/chrom_offset, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/pixels,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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332 Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/pixels/bin1_id, Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/pixels/bin2_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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333 Diploid_2_AAGAGGCA_TATCCTCT_R1fastqgz/pixels/count, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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334 Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/bins, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/bins/chrom,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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335 Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/bins/end, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/bins/start,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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336 Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/chroms, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/chroms/length,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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337 Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/chroms/name, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/indexes,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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338 Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/indexes/bin1_offset, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/indexes/chrom_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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339 Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/pixels, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/pixels/bin1_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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340 Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/pixels/bin2_id, Diploid_2_AAGAGGCA_TCTCTCCG_R1fastqgz/pixels/count,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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341 Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/bins,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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342 Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/bins/chrom, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/bins/end,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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343 Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/bins/start, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/chroms,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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344 Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/chroms/length, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/chroms/name,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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345 Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/indexes, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/indexes/bin1_offset,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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346 Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/indexes/chrom_offset, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/pixels,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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347 Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/pixels/bin1_id, Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/pixels/bin2_id,
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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348 Diploid_2_AGGCAGAA_AAGGAGTA_R1fastqgz/pixels/count'/>
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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349 </assert_contents>
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350 </output>
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351 </test>
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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352 </tests>
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353 <help><![CDATA[
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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354
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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355 Change the resolution of the scHi-C matrices
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356 ============================================
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357
1
ecae4e42d40a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 72e1e90ac05a32dbd6fc675073429c0086048b18"
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358 **scHicMergeMatrixBins** is used to decrease the resolution of single cell matrices stored in a scool file by merging their adjacent bins. With this tool, you can for example create out of a 5kb
ecae4e42d40a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 72e1e90ac05a32dbd6fc675073429c0086048b18"
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359 contact matrix a 50kb one:
ecae4e42d40a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 72e1e90ac05a32dbd6fc675073429c0086048b18"
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360 Number of bins to merge = 10
ecae4e42d40a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 72e1e90ac05a32dbd6fc675073429c0086048b18"
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361 5kb * 10 = 50k
ecae4e42d40a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 72e1e90ac05a32dbd6fc675073429c0086048b18"
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362 Depending on the downstream analyses to perform on single cell Hi-C matrices generated with HiCExplorer, one might need different bin resolutions, for instance during clustering or for plotting small or large regions of consensus matrices.
ecae4e42d40a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 72e1e90ac05a32dbd6fc675073429c0086048b18"
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363 The best practice is to merge bins in uncorrected matrices, and correct the lower resolution matrices using `scHicCorrectMatrices` subsequently.
0
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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364
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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365 For more information about scHiCExplorer please consider our documentation on readthedocs.io_
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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366
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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367 .. _readthedocs.io: http://schicexplorer.readthedocs.io/
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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368 ]]></help>
18ac7f83ae0e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/schicexplorer commit 2a80f777c0221752232882c0d43b55f2b1dcd223"
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369 <expand macro="citations" />
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370
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371 </tool>