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comparison seacr.xml @ 1:66b7657f0bd6 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seacr commit f7c7e646aa289679a205cc8ce74a77608ce8f422"
author iuc
date Thu, 23 Apr 2020 04:30:14 -0400
parents c8ff96b9fb97
children
comparison
equal deleted inserted replaced
0:c8ff96b9fb97 1:66b7657f0bd6
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="chromhmm_seacr" name="SEACR " version="@TOOL_VERSION@+@WRAPPER_VERSION@"> 2 <tool id="seacr" name="SEACR" version="@TOOL_VERSION@+@WRAPPER_VERSION@">
3 <description>for sparse enrichment analysis</description> 3 <description>for sparse enrichment analysis</description>
4 <macros> 4 <macros>
5 <token name="@TOOL_VERSION@">1.3</token> 5 <token name="@TOOL_VERSION@">1.3</token>
6 <token name="@WRAPPER_VERSION@">galaxy0</token> 6 <token name="@WRAPPER_VERSION@">galaxy1</token>
7 </macros> 7 </macros>
8 <requirements> 8 <requirements>
9 <requirement type="package" version="@TOOL_VERSION@">seacr</requirement> 9 <requirement type="package" version="@TOOL_VERSION@">seacr</requirement>
10 <requirement type="package" version="2.29.2">bedtools</requirement> 10 <requirement type="package" version="2.29.2">bedtools</requirement>
11 </requirements> 11 </requirements>
60 </conditional> 60 </conditional>
61 <param name="normalize" value="norm"/> 61 <param name="normalize" value="norm"/>
62 <param name="mode" value="stringent"/> 62 <param name="mode" value="stringent"/>
63 <output name="out_s"> 63 <output name="out_s">
64 <assert_contents> 64 <assert_contents>
65 <has_n_lines n="103"/> 65 <has_n_lines n="46"/>
66 <has_line line="I&#009;3463&#009;3717&#009;609&#009;4&#009;I:3557-3599"/> 66 <has_line line="chr1&#009;10013&#009;10468&#009;549.991&#009;1.7156&#009;chr1:10346-10357"/>
67 <has_line line="I&#009;225524&#009;225978&#009;1100&#009;5&#009;I:225655-225672"/> 67 <has_line line="chr1&#009;365935&#009;366920&#009;84.9934&#009;0.142966&#009;chr1:366191-366801"/>
68 </assert_contents> 68 </assert_contents>
69 </output> 69 </output>
70 </test> 70 </test>
71 <!-- #2 --> 71 <!-- #2 -->
72 <test expect_num_outputs="1"> 72 <test expect_num_outputs="1">
77 </conditional> 77 </conditional>
78 <param name="normalize" value="non"/> 78 <param name="normalize" value="non"/>
79 <param name="mode" value="relaxed"/> 79 <param name="mode" value="relaxed"/>
80 <output name="out_r"> 80 <output name="out_r">
81 <assert_contents> 81 <assert_contents>
82 <has_n_lines n="483"/> 82 <has_n_lines n="200"/>
83 <has_line line="I&#009;507&#009;665&#009;200&#009;2&#009;I:565-607"/> 83 <has_line line="chr1&#009;10013&#009;10468&#009;549.991&#009;1.7156&#009;chr1:10346-10357"/>
84 <has_line line="I&#009;226156&#009;226330&#009;199&#009;2&#009;I:226231-226256"/> 84 <has_line line="chr1&#009;367832&#009;368025&#009;13.7963&#009;0.0714832&#009;chr1:367832-368025"/>
85 </assert_contents>
86 </output>
87 </test>
88 <!-- #3 -->
89 <test expect_num_outputs="1">
90 <param name="bedgraph" value="test.bedgraph"/>
91 <conditional name="control_cond">
92 <param name="control_sel" value="f"/>
93 <param name="f" value="control.bedgraph"/>
94 </conditional>
95 <param name="normalize" value="norm"/>
96 <param name="mode" value="relaxed"/>
97 <output name="out_r">
98 <assert_contents>
99 <has_n_lines n="7"/>
100 <has_line line="chr1&#009;10596&#009;11929&#009;430.615&#009;0.714832&#009;chr1:11036-11191"/>
101 <has_line line="chr1&#009;251258&#009;252108&#009;384.65&#009;1.00076&#009;chr1:251347-251526"/>
85 </assert_contents> 102 </assert_contents>
86 </output> 103 </output>
87 </test> 104 </test>
88 </tests> 105 </tests>
89 <help><![CDATA[ 106 <help><![CDATA[