Mercurial > repos > iuc > seacr

diff seacr.xml @ 1:66b7657f0bd6 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seacr commit f7c7e646aa289679a205cc8ce74a77608ce8f422"
author iuc
date Thu, 23 Apr 2020 04:30:14 -0400
parents c8ff96b9fb97
children
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--- a/seacr.xml	Wed Feb 12 11:27:36 2020 -0500
+++ b/seacr.xml	Thu Apr 23 04:30:14 2020 -0400
@@ -1,9 +1,9 @@
 <?xml version="1.0"?>
-<tool id="chromhmm_seacr" name="SEACR " version="@TOOL_VERSION@+@WRAPPER_VERSION@">
+<tool id="seacr" name="SEACR" version="@TOOL_VERSION@+@WRAPPER_VERSION@">
     <description>for sparse enrichment analysis</description>
     <macros>
         <token name="@TOOL_VERSION@">1.3</token>
-        <token name="@WRAPPER_VERSION@">galaxy0</token>
+        <token name="@WRAPPER_VERSION@">galaxy1</token>
     </macros>
     <requirements>
         <requirement type="package" version="@TOOL_VERSION@">seacr</requirement>
@@ -62,9 +62,9 @@
             <param name="mode" value="stringent"/>
             <output name="out_s">
                 <assert_contents>
-                    <has_n_lines n="103"/>
-                    <has_line line="I&#009;3463&#009;3717&#009;609&#009;4&#009;I:3557-3599"/>
-                    <has_line line="I&#009;225524&#009;225978&#009;1100&#009;5&#009;I:225655-225672"/>
+                    <has_n_lines n="46"/>
+                    <has_line line="chr1&#009;10013&#009;10468&#009;549.991&#009;1.7156&#009;chr1:10346-10357"/>
+                    <has_line line="chr1&#009;365935&#009;366920&#009;84.9934&#009;0.142966&#009;chr1:366191-366801"/>
                 </assert_contents>
             </output>
         </test>
@@ -79,9 +79,26 @@
             <param name="mode" value="relaxed"/>
             <output name="out_r">
                 <assert_contents>
-                    <has_n_lines n="483"/>
-                    <has_line line="I&#009;507&#009;665&#009;200&#009;2&#009;I:565-607"/>
-                    <has_line line="I&#009;226156&#009;226330&#009;199&#009;2&#009;I:226231-226256"/>
+                    <has_n_lines n="200"/>
+                    <has_line line="chr1&#009;10013&#009;10468&#009;549.991&#009;1.7156&#009;chr1:10346-10357"/>
+                    <has_line line="chr1&#009;367832&#009;368025&#009;13.7963&#009;0.0714832&#009;chr1:367832-368025"/>
+                </assert_contents>
+            </output>
+        </test>
+        <!-- #3 -->
+        <test expect_num_outputs="1">
+            <param name="bedgraph" value="test.bedgraph"/>
+            <conditional name="control_cond">
+                <param name="control_sel" value="f"/>
+                <param name="f" value="control.bedgraph"/>
+            </conditional>
+            <param name="normalize" value="norm"/>
+            <param name="mode" value="relaxed"/>
+            <output name="out_r">
+                <assert_contents>
+                    <has_n_lines n="7"/>
+                    <has_line line="chr1&#009;10596&#009;11929&#009;430.615&#009;0.714832&#009;chr1:11036-11191"/>
+                    <has_line line="chr1&#009;251258&#009;252108&#009;384.65&#009;1.00076&#009;chr1:251347-251526"/>
                 </assert_contents>
             </output>
         </test>