Mercurial > repos > iuc > semibin_generate_sequence_features

comparison generate_sequence_features.xml @ 3:0608cf7dc528 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/semibin commit a9fc83e0029266f910b549d5d1eef6a9bc3e3f7b
author iuc
date Tue, 25 Mar 2025 15:53:11 +0000
parents ff4e487f4f7e
children
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2:ff4e487f4f7e 3:0608cf7dc528
23 --input-fasta 'contigs.fasta' 23 --input-fasta 'contigs.fasta'
24 --input-bam *.bam 24 --input-bam *.bam
25 --output 'output' 25 --output 'output'
26 --threads \${GALAXY_SLOTS:-1} 26 --threads \${GALAXY_SLOTS:-1}
27 @MIN_LEN@ 27 @MIN_LEN@
28 #if str($ml_threshold) != '' 28 #if $ml_threshold:
29 --ml-threshold $ml_threshold 29 --ml-threshold $ml_threshold
30 #end if 30 #end if
31 ]]></command> 31 ]]></command>
32 <inputs> 32 <inputs>
33 <expand macro="mode_fasta_bam"/> 33 <expand macro="mode_fasta_bam"/>
34 <expand macro="min_len"/> 34 <expand macro="min_len"/>
35 <expand macro="ml-threshold"/> 35 <expand macro="ml-threshold"/>
36
37 <param name="extra_output" type="select" multiple="true" label="Extra outputs" help="In addition to the training data"> 36 <param name="extra_output" type="select" multiple="true" label="Extra outputs" help="In addition to the training data">
38 <option value="coverage">Coverage files</option> 37 <option value="coverage">Coverage files</option>
39 <option value="contigs">Contigs (if multiple sample)</option> 38 <option value="contigs">Contigs (if multiple sample)</option>
40 </param> 39 </param>
41 </inputs> 40 </inputs>