Mercurial > repos > iuc > semibin_generate_sequence_features

comparison generate_sequence_features.xml @ 2:ff4e487f4f7e draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/semibin commit 13abac83068b126399ec415141007a48c2efaa84
author iuc
date Fri, 10 Nov 2023 20:50:57 +0000
parents 0ae1a2636de5
children
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1:0ae1a2636de5 2:ff4e487f4f7e
11 <command detect_errors="exit_code"><![CDATA[ 11 <command detect_errors="exit_code"><![CDATA[
12 #import re 12 #import re
13 @BAM_FILES@ 13 @BAM_FILES@
14 @FASTA_FILES@ 14 @FASTA_FILES@
15 15
16 SemiBin 16 SemiBin2
17 #if $mode.select == 'single' or $mode.select == 'co' 17 #if $mode.select == 'single' or $mode.select == 'co'
18 generate_sequence_features_single 18 generate_sequence_features_single
19 #else 19 #else
20 generate_sequence_features_multi 20 generate_sequence_features_multi
21 --separator '$separator' 21 --separator '$separator'
31 ]]></command> 31 ]]></command>
32 <inputs> 32 <inputs>
33 <expand macro="mode_fasta_bam"/> 33 <expand macro="mode_fasta_bam"/>
34 <expand macro="min_len"/> 34 <expand macro="min_len"/>
35 <expand macro="ml-threshold"/> 35 <expand macro="ml-threshold"/>
36
36 <param name="extra_output" type="select" multiple="true" label="Extra outputs" help="In addition to the training data"> 37 <param name="extra_output" type="select" multiple="true" label="Extra outputs" help="In addition to the training data">
37 <option value="coverage">Coverage files</option> 38 <option value="coverage">Coverage files</option>
38 <option value="contigs">Contigs (if multiple sample)</option> 39 <option value="contigs">Contigs (if multiple sample)</option>
39 </param> 40 </param>
40 </inputs> 41 </inputs>