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date Thu, 15 Feb 2024 14:23:13 +0000
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1 # SeqPrep Tool Documentation
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3 ## Overview
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5 SeqPrep is a bioinformatics tool primarily used for processing paired-end Illumina reads. It excels in merging overlapping reads and trimming adapter sequences, making it a valuable asset in genomic sequence analysis. Its efficient handling of paired-end data ensures high-quality preparation for downstream analysis.
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7 ## Key Features
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9 - **Read Merging**: Seamlessly merges overlapping paired-end Illumina reads into longer, single reads.
10 - **Adapter Trimming**: Efficiently trims adapter sequences from read ends to improve data quality.
11 - **Quality Control**: Offers options for quality score cutoff and minimum read length, enhancing the integrity of output data.
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13 ## Usage
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15 For a detailed tutorial on how to use SeqPrep, please refer to the [SeqPrep Tutorial](https://github.com/jstjohn/SeqPrep/tree/master).