seqprep: README.md annotate

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqprep commit 06828a419d1bf8546382b7c687a76b65a577e736

author	iuc
date	Thu, 15 Feb 2024 14:23:13 +0000
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0 8a0aa44e1e5b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqprep commit 06828a419d1bf8546382b7c687a76b65a577e736 iuc parents: diff changeset	1 # SeqPrep Tool Documentation
8a0aa44e1e5b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqprep commit 06828a419d1bf8546382b7c687a76b65a577e736 iuc parents: diff changeset	2
8a0aa44e1e5b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqprep commit 06828a419d1bf8546382b7c687a76b65a577e736 iuc parents: diff changeset	3 ## Overview
8a0aa44e1e5b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqprep commit 06828a419d1bf8546382b7c687a76b65a577e736 iuc parents: diff changeset	4
8a0aa44e1e5b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqprep commit 06828a419d1bf8546382b7c687a76b65a577e736 iuc parents: diff changeset	5 SeqPrep is a bioinformatics tool primarily used for processing paired-end Illumina reads. It excels in merging overlapping reads and trimming adapter sequences, making it a valuable asset in genomic sequence analysis. Its efficient handling of paired-end data ensures high-quality preparation for downstream analysis.
8a0aa44e1e5b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqprep commit 06828a419d1bf8546382b7c687a76b65a577e736 iuc parents: diff changeset	6
8a0aa44e1e5b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqprep commit 06828a419d1bf8546382b7c687a76b65a577e736 iuc parents: diff changeset	7 ## Key Features
8a0aa44e1e5b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqprep commit 06828a419d1bf8546382b7c687a76b65a577e736 iuc parents: diff changeset	8
8a0aa44e1e5b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqprep commit 06828a419d1bf8546382b7c687a76b65a577e736 iuc parents: diff changeset	9 - Read Merging: Seamlessly merges overlapping paired-end Illumina reads into longer, single reads.
8a0aa44e1e5b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqprep commit 06828a419d1bf8546382b7c687a76b65a577e736 iuc parents: diff changeset	10 - Adapter Trimming: Efficiently trims adapter sequences from read ends to improve data quality.
8a0aa44e1e5b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqprep commit 06828a419d1bf8546382b7c687a76b65a577e736 iuc parents: diff changeset	11 - Quality Control: Offers options for quality score cutoff and minimum read length, enhancing the integrity of output data.
8a0aa44e1e5b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqprep commit 06828a419d1bf8546382b7c687a76b65a577e736 iuc parents: diff changeset	12
8a0aa44e1e5b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqprep commit 06828a419d1bf8546382b7c687a76b65a577e736 iuc parents: diff changeset	13 ## Usage
8a0aa44e1e5b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqprep commit 06828a419d1bf8546382b7c687a76b65a577e736 iuc parents: diff changeset	14
8a0aa44e1e5b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqprep commit 06828a419d1bf8546382b7c687a76b65a577e736 iuc parents: diff changeset	15 For a detailed tutorial on how to use SeqPrep, please refer to the [SeqPrep Tutorial](https://github.com/jstjohn/SeqPrep/tree/master).