Mercurial > repos > iuc > seqtk
annotate seqtk_randbase.xml @ 3:bc7d99f46a5d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
author | iuc |
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date | Mon, 05 Jun 2017 13:27:11 -0400 |
parents | f73729b62b51 |
children | ecf1c30da3a2 |
rev | line source |
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0 | 1 <?xml version="1.0"?> |
2 <tool id="seqtk_randbase" name="seqtk_randbase" version="@WRAPPER_VERSION@.0"> | |
3
bc7d99f46a5d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
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changeset
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3 <description>choose a random base from hets</description> |
bc7d99f46a5d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
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4 <macros> |
bc7d99f46a5d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
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5 <import>macros.xml</import> |
bc7d99f46a5d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
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6 </macros> |
bc7d99f46a5d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
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changeset
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7 <expand macro="requirements"/> |
bc7d99f46a5d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
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2
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changeset
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8 <expand macro="stdio"/> |
bc7d99f46a5d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
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changeset
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9 <command><![CDATA[ |
bc7d99f46a5d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
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diff
changeset
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10 seqtk randbase |
bc7d99f46a5d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents:
2
diff
changeset
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11 '$in_file' |
bc7d99f46a5d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
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12 > '$default' |
bc7d99f46a5d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
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changeset
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13 ]]></command> |
bc7d99f46a5d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents:
2
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changeset
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14 <inputs> |
bc7d99f46a5d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents:
2
diff
changeset
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15 <expand macro="in_faq"/> |
bc7d99f46a5d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents:
2
diff
changeset
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16 </inputs> |
bc7d99f46a5d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents:
2
diff
changeset
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17 <outputs> |
bc7d99f46a5d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents:
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changeset
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18 <data name="default" format_source="in_file" label="Unambiguous $in_file.name"/> |
bc7d99f46a5d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents:
2
diff
changeset
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19 </outputs> |
bc7d99f46a5d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents:
2
diff
changeset
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20 <tests> |
bc7d99f46a5d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents:
2
diff
changeset
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21 <test> |
bc7d99f46a5d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents:
2
diff
changeset
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22 <param name="in_file" value="seqtk_randbase.fa"/> |
bc7d99f46a5d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents:
2
diff
changeset
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23 <output name="default" file="seqtk_randbase.out" ftype="fasta"/> |
bc7d99f46a5d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents:
2
diff
changeset
|
24 </test> |
bc7d99f46a5d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents:
2
diff
changeset
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25 </tests> |
bc7d99f46a5d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents:
2
diff
changeset
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26 <help><![CDATA[ |
0 | 27 **What it does** |
28 | |
29 Randomly resolves ambiguous bases | |
30 | |
31 :: | |
32 | |
33 # Input fasta | |
34 >ambig | |
35 ACGTMRWSYK | |
36 | |
37 results in | |
38 | |
39 :: | |
40 | |
41 # Output result | |
42 >ambig | |
43 ACGTCGTGTT | |
44 | |
45 @ATTRIBUTION@ | |
3
bc7d99f46a5d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents:
2
diff
changeset
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46 ]]></help> |
bc7d99f46a5d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents:
2
diff
changeset
|
47 <expand macro="citation" /> |
0 | 48 </tool> |