Mercurial > repos > iuc > seqtk
annotate seqtk_randbase.xml @ 2:f73729b62b51 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 2249d643284ee782d882cd200729a86a2c6bb744
author | iuc |
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date | Fri, 01 Jan 2016 14:49:42 -0500 |
parents | e0a0fd938de4 |
children | bc7d99f46a5d |
rev | line source |
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0 | 1 <?xml version="1.0"?> |
2 <tool id="seqtk_randbase" name="seqtk_randbase" version="@WRAPPER_VERSION@.0"> | |
3 <description>choose a random base from hets</description> | |
4 <macros> | |
5 <import>macros.xml</import> | |
6 </macros> | |
7 <expand macro="requirements"/> | |
8 <expand macro="stdio"/> | |
9 <command><![CDATA[seqtk randbase | |
10 $in_file | |
11 > $default]]></command> | |
12 <inputs> | |
13 <expand macro="in_faq"/> | |
14 </inputs> | |
15 <outputs> | |
16 <data format_source="in_file" hidden="false" name="default" label="Unambiguous $in_file.name"/> | |
17 </outputs> | |
18 <tests> | |
19 <test> | |
20 <param name="in_file" value="seqtk_randbase.fa"/> | |
21 <output name="default" file="seqtk_randbase.out" ftype="fasta"/> | |
22 </test> | |
23 </tests> | |
24 <help><![CDATA[ | |
25 **What it does** | |
26 | |
27 Randomly resolves ambiguous bases | |
28 | |
29 :: | |
30 | |
31 # Input fasta | |
32 >ambig | |
33 ACGTMRWSYK | |
34 | |
35 results in | |
36 | |
37 :: | |
38 | |
39 # Output result | |
40 >ambig | |
41 ACGTCGTGTT | |
42 | |
43 @ATTRIBUTION@ | |
44 ]]></help> | |
2
f73729b62b51
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 2249d643284ee782d882cd200729a86a2c6bb744
iuc
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45 <expand macro="citation" /> |
0 | 46 </tool> |