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comparison seqtk_mergepe.xml @ 3:bc7d99f46a5d draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
author iuc
date Mon, 05 Jun 2017 13:27:11 -0400
parents f73729b62b51
children ecf1c30da3a2
comparison
equal deleted inserted replaced
2:f73729b62b51 3:bc7d99f46a5d
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="seqtk_mergepe" name="seqtk_mergepe" version="@WRAPPER_VERSION@.0"> 2 <tool id="seqtk_mergepe" name="seqtk_mergepe" version="@WRAPPER_VERSION@.0">
3 <description>interleave two unpaired FASTA/Q files for a paired-end file</description> 3 <description>interleave two unpaired FASTA/Q files for a paired-end file</description>
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
8 <expand macro="stdio"/> 8 <expand macro="stdio"/>
9 <command><![CDATA[seqtk mergepe 9 <command><![CDATA[
10 $in_fq1 10 seqtk mergepe
11 $in_fq2 11 '$in_fq1'
12 > $default]]></command> 12 '$in_fq2'
13 <inputs> 13 > '$default'
14 <param name="in_fq1" type="data" format="fasta,fastq" label="Input FASTA/Q file #1"/> 14 ]]></command>
15 <param name="in_fq2" type="data" format="fasta,fastq" label="Input FASTA/Q file #2"/> 15 <inputs>
16 </inputs> 16 <param name="in_fq1" type="data" format="fasta,fastq" label="Input FASTA/Q file #1"/>
17 <outputs> 17 <param name="in_fq2" type="data" format="fasta,fastq" label="Input FASTA/Q file #2"/>
18 <data format_source="in_fq1" hidden="false" name="default" label="$in_fq1.name and $in_fq2.name as interleaved paired-end"/> 18 </inputs>
19 </outputs> 19 <outputs>
20 <tests> 20 <data name="default" format_source="in_fq1" label="$in_fq1.name and $in_fq2.name as interleaved paired-end"/>
21 <test> 21 </outputs>
22 <param name="in_fq1" value="paired_dat1.fq"/> 22 <tests>
23 <param name="in_fq2" value="paired_dat2.fq"/> 23 <test>
24 <output name="default" file="paired_dat.fq" ftype="fastq"/> 24 <param name="in_fq1" value="paired_dat1.fq"/>
25 </test> 25 <param name="in_fq2" value="paired_dat2.fq"/>
26 </tests> 26 <output name="default" file="paired_dat.fq" ftype="fastq"/>
27 <help><![CDATA[ 27 </test>
28 </tests>
29 <help><![CDATA[
28 **What it does** 30 **What it does**
29 31
30 Merge two files which constitute a paired-end file into a single, interleaved, paired-end FASTA/Q file 32 Merge two files which constitute a paired-end file into a single, interleaved, paired-end FASTA/Q file
31 33
32 :: 34 ::
87 @r-3/2 89 @r-3/2
88 @r-4/1 90 @r-4/1
89 @r-4/2 91 @r-4/2
90 92
91 @ATTRIBUTION@ 93 @ATTRIBUTION@
92 ]]></help> 94 ]]></help>
93 <expand macro="citation" /> 95 <expand macro="citation" />
94 </tool> 96 </tool>