Mercurial > repos > iuc > seqtk
diff seqtk_mergepe.xml @ 3:bc7d99f46a5d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
| author | iuc |
|---|---|
| date | Mon, 05 Jun 2017 13:27:11 -0400 |
| parents | f73729b62b51 |
| children | ecf1c30da3a2 |
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--- a/seqtk_mergepe.xml Fri Jan 01 14:49:42 2016 -0500 +++ b/seqtk_mergepe.xml Mon Jun 05 13:27:11 2017 -0400 @@ -1,30 +1,32 @@ <?xml version="1.0"?> <tool id="seqtk_mergepe" name="seqtk_mergepe" version="@WRAPPER_VERSION@.0"> - <description>interleave two unpaired FASTA/Q files for a paired-end file</description> - <macros> - <import>macros.xml</import> - </macros> - <expand macro="requirements"/> - <expand macro="stdio"/> - <command><![CDATA[seqtk mergepe - $in_fq1 - $in_fq2 -> $default]]></command> - <inputs> - <param name="in_fq1" type="data" format="fasta,fastq" label="Input FASTA/Q file #1"/> - <param name="in_fq2" type="data" format="fasta,fastq" label="Input FASTA/Q file #2"/> - </inputs> - <outputs> - <data format_source="in_fq1" hidden="false" name="default" label="$in_fq1.name and $in_fq2.name as interleaved paired-end"/> - </outputs> - <tests> - <test> - <param name="in_fq1" value="paired_dat1.fq"/> - <param name="in_fq2" value="paired_dat2.fq"/> - <output name="default" file="paired_dat.fq" ftype="fastq"/> - </test> - </tests> - <help><![CDATA[ + <description>interleave two unpaired FASTA/Q files for a paired-end file</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements"/> + <expand macro="stdio"/> + <command><![CDATA[ +seqtk mergepe +'$in_fq1' +'$in_fq2' +> '$default' + ]]></command> + <inputs> + <param name="in_fq1" type="data" format="fasta,fastq" label="Input FASTA/Q file #1"/> + <param name="in_fq2" type="data" format="fasta,fastq" label="Input FASTA/Q file #2"/> + </inputs> + <outputs> + <data name="default" format_source="in_fq1" label="$in_fq1.name and $in_fq2.name as interleaved paired-end"/> + </outputs> + <tests> + <test> + <param name="in_fq1" value="paired_dat1.fq"/> + <param name="in_fq2" value="paired_dat2.fq"/> + <output name="default" file="paired_dat.fq" ftype="fastq"/> + </test> + </tests> + <help><![CDATA[ **What it does** Merge two files which constitute a paired-end file into a single, interleaved, paired-end FASTA/Q file @@ -89,6 +91,6 @@ @r-4/2 @ATTRIBUTION@ -]]></help> - <expand macro="citation" /> + ]]></help> + <expand macro="citation" /> </tool>