Mercurial > repos > iuc > seqtk

comparison macros.xml @ 4:ecf1c30da3a2 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit ad43df79dca3dc7c3511c6eb2ccf8589d2804eb2
author iuc
date Wed, 17 Oct 2018 05:59:21 -0400
parents bc7d99f46a5d
children a09586d5149a
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3:bc7d99f46a5d 4:ecf1c30da3a2
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <macros> 2 <macros>
3 <xml name="requirements"> 3 <xml name="requirements">
4 <requirements> 4 <requirements>
5 <requirement type="package" version="1.2">seqtk</requirement> 5 <requirement type="package" version="1.3">seqtk</requirement>
6 <yield/> 6 <yield/>
7 </requirements> 7 </requirements>
8 </xml> 8 </xml>
9 <token name="@WRAPPER_VERSION@">1.2</token> 9 <token name="@WRAPPER_VERSION@">1.3</token>
10 <xml name="stdio"> 10 <xml name="stdio">
11 <stdio> 11 <stdio>
12 <!-- Anything other than zero is an error --> 12 <!-- Anything other than zero is an error -->
13 <exit_code range="1:"/> 13 <exit_code range="1:"/>
14 <exit_code range=":-1"/> 14 <exit_code range=":-1"/>
16 <regex match="Error:"/> 16 <regex match="Error:"/>
17 <regex match="Exception:"/> 17 <regex match="Exception:"/>
18 </stdio> 18 </stdio>
19 </xml> 19 </xml>
20 <xml name="in_fq"> 20 <xml name="in_fq">
21 <param name="in_file" type="data" format="fastq" label="Input FASTQ file"/> 21 <param name="in_file" type="data" format="fastq,fastq.gz" label="Input FASTQ file"/>
22 </xml> 22 </xml>
23 <xml name="in_faq"> 23 <xml name="in_faq">
24 <param name="in_file" type="data" format="fasta,fastq" label="Input FASTA/Q file"/> 24 <param name="in_file" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file"/>
25 </xml> 25 </xml>
26 <token name="@CONDITIONAL_GZIP_OUT@"><![CDATA[
27 #echo "| gzip --no-name" if $in_file.is_of_type('fasta.gz', 'fastq.gz') else "" # > '$default'
28 ]]></token>
26 <token name="@ATTRIBUTION@"><![CDATA[ 29 <token name="@ATTRIBUTION@"><![CDATA[
27 **Attribution** 30 **Attribution**
28 31
29 This Galaxy tool relies on the seqtk toolkit from `lh3/seqtk 32 This Galaxy tool relies on the seqtk toolkit from `lh3/seqtk
30 <https://github.com/lh3/seqtk/>`_, developed by Heng Li at the Broad Institute 33 <https://github.com/lh3/seqtk/>`_, developed by Heng Li at the Broad Institute