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annotate macros.xml @ 4:ecf1c30da3a2 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit ad43df79dca3dc7c3511c6eb2ccf8589d2804eb2
author iuc
date Wed, 17 Oct 2018 05:59:21 -0400
parents bc7d99f46a5d
children a09586d5149a
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1 <?xml version="1.0"?>
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2 <macros>
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3 <xml name="requirements">
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4 <requirements>
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5 <requirement type="package" version="1.3">seqtk</requirement>
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6 <yield/>
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7 </requirements>
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8 </xml>
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9 <token name="@WRAPPER_VERSION@">1.3</token>
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10 <xml name="stdio">
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11 <stdio>
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12 <!-- Anything other than zero is an error -->
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13 <exit_code range="1:"/>
bc7d99f46a5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
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14 <exit_code range=":-1"/>
bc7d99f46a5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
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15 <!-- In case the return code has not been set propery check stderr too -->
bc7d99f46a5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
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16 <regex match="Error:"/>
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17 <regex match="Exception:"/>
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18 </stdio>
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19 </xml>
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20 <xml name="in_fq">
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21 <param name="in_file" type="data" format="fastq,fastq.gz" label="Input FASTQ file"/>
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22 </xml>
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23 <xml name="in_faq">
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24 <param name="in_file" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file"/>
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25 </xml>
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26 <token name="@CONDITIONAL_GZIP_OUT@"><![CDATA[
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27 #echo "| gzip --no-name" if $in_file.is_of_type('fasta.gz', 'fastq.gz') else "" # > '$default'
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28 ]]></token>
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29 <token name="@ATTRIBUTION@"><![CDATA[
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30 **Attribution**
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31
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32 This Galaxy tool relies on the seqtk toolkit from `lh3/seqtk
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33 <https://github.com/lh3/seqtk/>`_, developed by Heng Li at the Broad Institute
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34 ]]></token>
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35 <xml name="citation">
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36 <citations>
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37 </citations>
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38 </xml>
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39 </macros>