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comparison seqtk_seq.xml @ 2:f73729b62b51 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 2249d643284ee782d882cd200729a86a2c6bb744
author iuc
date Fri, 01 Jan 2016 14:49:42 -0500
parents e0a0fd938de4
children bc7d99f46a5d
comparison
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1:61718851f199 2:f73729b62b51
24 $A 24 $A
25 $C 25 $C
26 $N 26 $N
27 $x1 27 $x1
28 $x2 28 $x2
29 $V 29 #if $in_file.ext == "fastqillumina"
30 -V
31 #end if
30 32
31 $in_file 33 $in_file
32 > $default]]></command> 34 > $default]]></command>
33 <inputs> 35 <inputs>
34 <expand macro="in_faq"/> 36 <expand macro="in_faq"/>
46 <param checked="false" label="force FASTA output (discard quality)" help="(-A)" name="A" type="boolean" falsevalue="" truevalue="-A"/> 48 <param checked="false" label="force FASTA output (discard quality)" help="(-A)" name="A" type="boolean" falsevalue="" truevalue="-A"/>
47 <param checked="false" label="drop comments at the header lines" help="(-C)" name="C" type="boolean" falsevalue="" truevalue="-C"/> 49 <param checked="false" label="drop comments at the header lines" help="(-C)" name="C" type="boolean" falsevalue="" truevalue="-C"/>
48 <param checked="false" label="drop sequences containing ambiguous bases" help="(-N)" name="N" type="boolean" falsevalue="" truevalue="-N"/> 50 <param checked="false" label="drop sequences containing ambiguous bases" help="(-N)" name="N" type="boolean" falsevalue="" truevalue="-N"/>
49 <param checked="false" label="output the 2n-1 reads only" help="(-1)" name="x1" type="boolean" falsevalue="" truevalue="-1"/> 51 <param checked="false" label="output the 2n-1 reads only" help="(-1)" name="x1" type="boolean" falsevalue="" truevalue="-1"/>
50 <param checked="false" label="output the 2n reads only" help="(-2)" name="x2" type="boolean" falsevalue="" truevalue="-2"/> 52 <param checked="false" label="output the 2n reads only" help="(-2)" name="x2" type="boolean" falsevalue="" truevalue="-2"/>
51 <param checked="false" label="shift quality by '(-Q) - 33' " help="(-V)" name="V" type="boolean" falsevalue="" truevalue="-V"/>
52 </inputs> 53 </inputs>
53 <outputs> 54 <outputs>
54 <data format_source="in_file" hidden="false" name="default"/> 55 <data format_source="in_file" hidden="false" name="default"/>
55 </outputs> 56 </outputs>
56 <tests> 57 <tests>
71 72
72 Various utilities for transforming FASTA/Q data 73 Various utilities for transforming FASTA/Q data
73 74
74 @ATTRIBUTION@ 75 @ATTRIBUTION@
75 ]]></help> 76 ]]></help>
77 <expand macro="citation" />
76 </tool> 78 </tool>