Mercurial > repos > iuc > seqtk

diff seqtk_seq.xml @ 2:f73729b62b51 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 2249d643284ee782d882cd200729a86a2c6bb744
author iuc
date Fri, 01 Jan 2016 14:49:42 -0500
parents e0a0fd938de4
children bc7d99f46a5d
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line diff
--- a/seqtk_seq.xml	Thu Feb 05 12:00:43 2015 -0500
+++ b/seqtk_seq.xml	Fri Jan 01 14:49:42 2016 -0500
@@ -26,7 +26,9 @@
 $N
 $x1
 $x2
-$V
+#if $in_file.ext == "fastqillumina"
+ -V
+#end if
 
 $in_file
 > $default]]></command>
@@ -48,7 +50,6 @@
     <param checked="false" label="drop sequences containing ambiguous bases" help="(-N)" name="N" type="boolean" falsevalue="" truevalue="-N"/>
     <param checked="false" label="output the 2n-1 reads only" help="(-1)" name="x1" type="boolean" falsevalue="" truevalue="-1"/>
     <param checked="false" label="output the 2n reads only" help="(-2)" name="x2" type="boolean" falsevalue="" truevalue="-2"/>
-    <param checked="false" label="shift quality by '(-Q) - 33' " help="(-V)" name="V" type="boolean" falsevalue="" truevalue="-V"/>
   </inputs>
   <outputs>
     <data format_source="in_file" hidden="false" name="default"/>
@@ -73,4 +74,5 @@
 
 @ATTRIBUTION@
 ]]></help>
+  <expand macro="citation" />
 </tool>