Mercurial > repos > iuc > seqtk

diff macros.xml @ 5:a09586d5149a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 83ecfe7d9bbf03c91f27ba18776352a1ebf8cf6f
author iuc
date Fri, 11 Jan 2019 05:15:20 -0500
parents ecf1c30da3a2
children 58c8ece95b53
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line diff
--- a/macros.xml	Wed Oct 17 05:59:21 2018 -0400
+++ b/macros.xml	Fri Jan 11 05:15:20 2019 -0500
@@ -2,11 +2,13 @@
 <macros>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="1.3">seqtk</requirement>
+            <requirement type="package" version="@TOOL_VERSION@">seqtk</requirement>
+            <requirement type="package" version="2.3.4">pigz</requirement>
             <yield/>
         </requirements>
     </xml>
-    <token name="@WRAPPER_VERSION@">1.3</token>
+    <token name="@TOOL_VERSION@">1.3</token>
+    <token name="@AWK_VERSION@">4.2.1</token>
     <xml name="stdio">
         <stdio>
             <!-- Anything other than zero is an error -->
@@ -24,7 +26,7 @@
         <param name="in_file" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file"/>
     </xml>
     <token name="@CONDITIONAL_GZIP_OUT@"><![CDATA[
-    #echo "| gzip --no-name" if $in_file.is_of_type('fasta.gz', 'fastq.gz') else "" # > '$default'
+    #echo "| pigz --no-name --no-time" if $in_file.is_of_type('fasta.gz', 'fastq.gz') else "" # > '$default'
     ]]></token>
     <token name="@ATTRIBUTION@"><![CDATA[
 **Attribution**