Mercurial > repos > iuc > sickle

comparison tool_dependencies.xml @ 0:a5f56370e870 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sickle commit 128d3f255f00c47fa2b16d9b7432d48a089660c1
author iuc
date Thu, 12 Nov 2015 07:05:48 -0500
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children 89c9361b93da
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-1:000000000000 0:a5f56370e870
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="zlib" version="1.2.8">
4 <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="sickle" version="1.33">
7 <install version="1.0">
8 <actions>
9 <action target_filename="sickle-1.33.tar.gz" type="download_by_url">https://github.com/najoshi/sickle/archive/v1.33.tar.gz</action>
10 <action type="set_environment_for_install">
11 <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
12 <package name="zlib" version="1.2.8" />
13 </repository>
14 </action>
15 <action type="shell_command">make</action>
16 <action type="move_file">
17 <source>sickle</source>
18 <destination>$INSTALL_DIR/bin</destination>
19 </action>
20 <action type="set_environment">
21 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
22 </action>
23 </actions>
24 </install>
25 <readme>
26 Sickle is a windowed adaptive trimming tool for FASTQ files using quality.
27 </readme>
28 </package>
29 </tool_dependency>