Mercurial > repos > iuc > snpeff_sars_cov_2
view snpEff_macros.xml @ 0:2a3a00c1fa0a draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit e6d1b32be9df14beb1e2859a0d2fa29a2d09227e"
author | iuc |
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date | Thu, 18 Jun 2020 16:11:49 -0400 |
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<macros> <xml name="requirement"> <requirement type="package" version="4.5covid19">snpeff</requirement> <yield/> </xml> <xml name="stdio"> <stdio> <exit_code range=":-1" level="fatal" description="Error: Cannot open file" /> <exit_code range="1:" level="fatal" description="Error" /> </stdio> </xml> <xml name="version_command"> <version_command><![CDATA[ snpEff -version ]]></version_command> </xml> <token name="@WRAPPER_VERSION@">4.5covid19</token> <token name="@SNPEFF_VERSION@">SnpEff4.5</token> <token name="@JAVA_OPTIONS@">-Xmx\${GALAXY_MEMORY_MB:-8192}m</token> <token name="@EXTERNAL_DOCUMENTATION@"> ------- To learn more about SnpEff read its manual at http://snpeff.sourceforge.net/SnpEff_manual.html </token> <token name="@SNPEFF_IN_GALAXY_INFO@"> ------- .. class:: warningmark **Databases in the SnpEff Covid-19 edition** This special version of SnpEff provides only a fixed number of SARS-CoV-2-related genome databases. Unlike with regular SnpEff releases, it is not possible to extend this set, *i.e*, you cannot download additional databases or build custom databases for this edition. </token> <xml name="citations"> <citations> <citation type="doi">10.4161/fly.19695</citation> <yield /> </citations> </xml> </macros>