annotate test-data/extFields_test3_out.vcf @ 6:2b3e65a4252f draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 693e1a3641c776965f68d688c8e1409adba7da1e
author iuc
date Wed, 16 Jan 2019 15:35:26 -0500
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09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
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1 CHROM POS ID REF ALT FILTER ANN[*].EFFECT
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2 U00096 1518079 T G synonymous_variant
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3 U00096 1518079 T G upstream_gene_variant
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8 U00096 1518079 T G downstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
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26 U00096 1518212 T A intergenic_region
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27 U00096 1523784 G A missense_variant
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28 U00096 1523784 G A upstream_gene_variant
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36 U00096 1524994 CTTT CT frameshift_variant
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45 U00096 1525214 T A upstream_gene_variant
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54 U00096 1525214 T A intergenic_region
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73 U00096 1525377 AGG AGGG,AGT intergenic_region
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75 U00096 1527079 A G missense_variant
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81 U00096 1527079 A G upstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
82 U00096 1527079 A G downstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
83 U00096 1527079 A G downstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
84 U00096 1527079 A G downstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
85 U00096 1527079 A G downstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
86 U00096 1527291 G T missense_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
87 U00096 1527291 G T upstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
88 U00096 1527291 G T upstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
89 U00096 1527291 G T upstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
90 U00096 1527291 G T upstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
91 U00096 1527291 G T upstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
92 U00096 1527291 G T upstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
93 U00096 1527291 G T downstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
94 U00096 1527291 G T downstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
95 U00096 1527291 G T downstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
96 U00096 1527291 G T downstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
97 U00096 1527328 A C missense_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
98 U00096 1527328 A C upstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
99 U00096 1527328 A C upstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
100 U00096 1527328 A C upstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
101 U00096 1527328 A C upstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
102 U00096 1527328 A C upstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
103 U00096 1527328 A C upstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
104 U00096 1527328 A C downstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
105 U00096 1527328 A C downstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
106 U00096 1527328 A C downstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
107 U00096 1527328 A C downstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
108 U00096 1532370 G T missense_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
109 U00096 1532370 G T upstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
110 U00096 1532370 G T downstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
111 U00096 1532370 G T downstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
112 U00096 1532370 G T downstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
113 U00096 1532370 G T downstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
114 U00096 1532370 G T downstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
115 U00096 1532370 G T downstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
116 U00096 1532370 G T downstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
117 U00096 1532370 G T downstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
118 U00096 1532370 G T downstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
119 U00096 1532370 G T downstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
120 U00096 1533613 T C synonymous_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
121 U00096 1533613 T C upstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
122 U00096 1533613 T C downstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
123 U00096 1533613 T C downstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
124 U00096 1533613 T C downstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
125 U00096 1533613 T C downstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
126 U00096 1533613 T C downstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
127 U00096 1533613 T C downstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
128 U00096 1533613 T C downstream_gene_variant
09d6806c609e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
iuc
parents:
diff changeset
129 U00096 1533613 T C downstream_gene_variant