Mercurial > repos > iuc > snpsift_dbnsfp

annotate snpSift_macros.xml @ 1:13191d4914f7 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift_dbnsfp commit 21b46ae2c90ba7e569b2b3a9eaf938f8dedb2c31
author iuc
date Tue, 07 Jun 2016 10:04:48 -0400
parents dc480609d9c1
children c838e7136a40
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
dc480609d9c1 Uploaded
iuc
parents:
diff changeset
1 <macros>
dc480609d9c1 Uploaded
iuc
parents:
diff changeset
2 <xml name="requirements">
dc480609d9c1 Uploaded
iuc
parents:
diff changeset
3 <requirements>
1
13191d4914f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift_dbnsfp commit 21b46ae2c90ba7e569b2b3a9eaf938f8dedb2c31
iuc
parents: 0
diff changeset
4 <requirement type="package" version="4.1">snpEff</requirement>
0
dc480609d9c1 Uploaded
iuc
parents:
diff changeset
5 </requirements>
dc480609d9c1 Uploaded
iuc
parents:
diff changeset
6 </xml>
dc480609d9c1 Uploaded
iuc
parents:
diff changeset
7 <xml name="stdio">
dc480609d9c1 Uploaded
iuc
parents:
diff changeset
8 <stdio>
dc480609d9c1 Uploaded
iuc
parents:
diff changeset
9 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" />
dc480609d9c1 Uploaded
iuc
parents:
diff changeset
10 <exit_code range="1:" level="fatal" description="Error" />
dc480609d9c1 Uploaded
iuc
parents:
diff changeset
11 </stdio>
dc480609d9c1 Uploaded
iuc
parents:
diff changeset
12 </xml>
1
13191d4914f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift_dbnsfp commit 21b46ae2c90ba7e569b2b3a9eaf938f8dedb2c31
iuc
parents: 0
diff changeset
13 <xml name="version_command">
13191d4914f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift_dbnsfp commit 21b46ae2c90ba7e569b2b3a9eaf938f8dedb2c31
iuc
parents: 0
diff changeset
14 <version_command>java -jar "$SNPEFF_JAR_PATH/snpEff.jar" -version</version_command>
13191d4914f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift_dbnsfp commit 21b46ae2c90ba7e569b2b3a9eaf938f8dedb2c31
iuc
parents: 0
diff changeset
15 </xml>
13191d4914f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift_dbnsfp commit 21b46ae2c90ba7e569b2b3a9eaf938f8dedb2c31
iuc
parents: 0
diff changeset
16 <token name="@WRAPPER_VERSION@">4.1</token>
0
dc480609d9c1 Uploaded
iuc
parents:
diff changeset
17 <token name="@EXTERNAL_DOCUMENTATION@">
dc480609d9c1 Uploaded
iuc
parents:
diff changeset
18
dc480609d9c1 Uploaded
iuc
parents:
diff changeset
19 For details about this tool, please go to:
dc480609d9c1 Uploaded
iuc
parents:
diff changeset
20 http://snpeff.sourceforge.net/SnpEff_manual.html
dc480609d9c1 Uploaded
iuc
parents:
diff changeset
21
dc480609d9c1 Uploaded
iuc
parents:
diff changeset
22 </token>
dc480609d9c1 Uploaded
iuc
parents:
diff changeset
23 <token name="@CITATION_SECTION@">------
dc480609d9c1 Uploaded
iuc
parents:
diff changeset
24
dc480609d9c1 Uploaded
iuc
parents:
diff changeset
25 **Citation**
dc480609d9c1 Uploaded
iuc
parents:
diff changeset
26
dc480609d9c1 Uploaded
iuc
parents:
diff changeset
27 For the underlying tool, please cite the following two publications:
dc480609d9c1 Uploaded
iuc
parents:
diff changeset
28
dc480609d9c1 Uploaded
iuc
parents:
diff changeset
29 SnpSift citation:
dc480609d9c1 Uploaded
iuc
parents:
diff changeset
30 "Using Drosophila melanogaster as a model for genotoxic chemical mutational studies with a new program, SnpSift", Cingolani, P., et. al., Frontiers in Genetics, 3:35, 2012.
dc480609d9c1 Uploaded
iuc
parents:
diff changeset
31
dc480609d9c1 Uploaded
iuc
parents:
diff changeset
32 </token>
dc480609d9c1 Uploaded
iuc
parents:
diff changeset
33 <xml name="citations">
dc480609d9c1 Uploaded
iuc
parents:
diff changeset
34 <citations>
dc480609d9c1 Uploaded
iuc
parents:
diff changeset
35 <citation type="doi">10.3389/fgene.2012.00035</citation>
dc480609d9c1 Uploaded
iuc
parents:
diff changeset
36 <yield />
dc480609d9c1 Uploaded
iuc
parents:
diff changeset
37 </citations>
dc480609d9c1 Uploaded
iuc
parents:
diff changeset
38 </xml>
dc480609d9c1 Uploaded
iuc
parents:
diff changeset
39 </macros>