Mercurial > repos > iuc > spyboat
diff output_report.py @ 1:639d2031d998 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
| author | iuc |
|---|---|
| date | Mon, 30 Nov 2020 21:11:23 +0000 |
| parents | 76733d05d8ef |
| children |
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--- a/output_report.py Sat Nov 28 13:45:34 2020 +0000 +++ b/output_report.py Mon Nov 30 21:11:23 2020 +0000 @@ -86,7 +86,7 @@ logger.info("Produced 3 distribution plots..") -def create_html(frame_nums, html_fname="OutputReport.html"): +def create_html(frame_nums, par_str, html_fname="OutputReport.html"): """ The html generated assumes the respective png's have been created with 'produce_snapshots' and 'produce_distr_plots' @@ -105,25 +105,25 @@ <div class="snapshot_gallery"> <figure class=”snapshot_gallery__item - snapshot_gallery__item--1"> + snapshot_gallery__item--1" style="margin: 0 0"> <img src="input_frame{frame_num}.png" alt="The Input" class="snapshot_gallery__img"> </figure> <figure class=”snapshot_gallery__item - snapshot_gallery__item--2"> + snapshot_gallery__item--2" style="margin: 0 0"> <img src="phase_frame{frame_num}.png" alt="Phase" class="snapshot_gallery__img"> </figure> <figure class=”snapshot_gallery__item - snapshot_gallery__item--3"> + snapshot_gallery__item--3" style="margin: 0 0"> <img src="period_frame{frame_num}.png" alt="Period" class="snapshot_gallery__img"> </figure> <figure class=”snapshot_gallery__item - snapshot_gallery__item--4"> + snapshot_gallery__item--4" style="margin: 0 0"> <img src="amplitude_frame{frame_num}.png" alt="Amplitude" class="snapshot_gallery__img"> </figure> @@ -132,6 +132,18 @@ """ galleries += new_gal + parameter_cells = '' + for line in par_str.split('\n'): + # last str is empty.. + if not line: + break + par_name, par_val = line.split('->') + parameter_cells += f''' + <tr> + <td>{par_name}</td> + <td>{par_val}</td> + </tr>''' + html_string = f""" <html> <!-- this file got automatically created by 'output_report.py' --> @@ -141,7 +153,12 @@ <!--link rel="stylesheet" href="styles.css"--> <style type="text/css"> body{{ margin:10 100; background:whitesmoke; }} - /*body{{ margin:10 100; background:darkslategrey; }}*/ + p{{ + text-align: center; + margin-top: 0.05cm; + margin-bottom: .05cm; + color:#2c2e2e; + }} .center{{ text-align: center; display: block; @@ -150,60 +167,80 @@ width: 100%;}} /* matplotlib output at 1600x1200 */ - .distr_gallery {{ - display: grid; - margin: 0 auto; + .snapshot_gallery {{ + margin: 0 0; text-align: center; - /* border: 1px dashed rgba(4, 4, 4, 0.35); */ - grid-template-columns: repeat(3,1fr); - grid-template-rows: 20vw; - grid-gap: 0px; - column-gap: 0px - }} - .distr_gallery__img {{ - width: 100%; - height: 100%; - object-fit: contain; + display: grid; + grid-template-columns: repeat(2,1fr); + grid-template-rows: repeat(2,27vw); + grid-gap: 5px; }} - - /* matplotlib output at 1600x1200 */ - .snapshot_gallery {{ - display: grid; - margin: 0 auto; - border: 1px dashed rgba(4, 4, 4, 0.35); - text-align: center; - grid-template-columns: repeat(2,1fr); - grid-template-rows: repeat(2,20vw); - grid-gap: 5px; - }} .snapshot_gallery__img {{ width: 100%; height: 100%; object-fit: contain; + margin-top: 5px; + margin-bottom: 15px; }} .subheader{{ text-align:center; font-size: 160%; color:#363333;}} + .centerimg{{ + text-align: center; + width: 65%; + max-width: 400px; + display: block; + padding: 10px; + margin-left: auto; + margin-right: auto; + }} + + .div_distr{{ + text-align: center; + border-radius: 25px; + margin-top: 1cm; + margin: auto; + margin-bottom: 0.5cm; + background-color: #cce1e3; + max-width: 550px; + }} + + .partable{{ + width: 70%; + margin-left: auto; + margin-right: auto; + }} + + tr, td{{ + color:#2c2e2e; + font-size: 110%; + }} + </style> </head> <body> <h1 style="text-align:center; color:#363333">SpyBOAT Results Report</h1> - <hr style="width:50%"> - <h1 class="subheader"> Distribution Dynamics </h1> - <div class="distr_gallery"> - <figure class=”distr_gallery__item distr_gallery__item--1"> - <img src="period_distr.png" alt="Period" class="distr_gallery__img"> - </figure> + <hr style="width:70%"> + + <h1 class="subheader"> Spatial Summary Statistics </h1> + <div class="div_distr"> + <img src="period_distr.png" alt="Period" + class="centerimg"> + <p> Median and quartiles of the estimated periods for each frame </p> + </div> + - <figure class=”distr_gallery__item distr_gallery__item--2"> - <img src="power_distr.png" alt="Power" class="distr_gallery__img"> - </figure> - - <figure class=”distr_gallery__item distr_gallery__item--3"> - <img src="phase_distr.png" alt="Phase" class="distr_gallery__img"> - </figure> + <div class="div_distr"> + <img src="power_distr.png" alt="Period" + class="centerimg"> + <p> Median and quartiles of the ridge wavelet power for each frame </p> + </div> + <div class="div_distr"> + <img src="phase_distr.png" alt="Period" + class="centerimg"> + <p> Kuramoto order parameter for the phases estimated for each frame </p> </div> @@ -219,6 +256,17 @@ {galleries} </div> + <h1 class="subheader"> Parameters </h1> + <div class="div_distr"> + <table border = "1" class="partable"> + <tr> + <th>Name</th> + <th>Value</th> + </tr> + {parameter_cells} + </table> + </div> + <!-- javascript with escaped '{{'---> <script> var slideIndex = 1; @@ -250,4 +298,4 @@ return html_string # for local testing -# create_html([0,20,40,60,80]) +# create_html([0,20], 'par1 -> val1\n verylongpar2 -> val2')