Mercurial > repos > iuc > spyboat

annotate output_report.py @ 1:639d2031d998 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
author iuc
date Mon, 30 Nov 2020 21:11:23 +0000
parents 76733d05d8ef
children
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76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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1 """ Produces plots and a summary html 'headless' """
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2 import logging
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3 import os
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4
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5 import matplotlib
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6 import matplotlib.pyplot as ppl
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7 import spyboat.plotting as spyplot
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9 ppl.switch_backend('Agg')
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10 matplotlib.rcParams["text.usetex"] = False
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11 logger = logging.getLogger(__name__)
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13 # figure resolution
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14 DPI = 250
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17 def produce_snapshots(input_movie, results, frame, Wkwargs, img_path="."):
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18 """
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19 Takes the *input_movie* and the *results* dictionary
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20 from spyboat.processing.run_parallel and produces phase,
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21 period and amplitude snapshot png's.
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23 For the period snapshot also the period range is needed,
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24 hence the analysis dictionary 'Wkwargs' also gets passed.
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26 The output files name pattern is:
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27 [input, phase, period, amplitude]_frame{frame}.png
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28 and the storage location in *img_path*.
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29
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30 These get picked up by 'create_html'
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31 """
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32
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33 spyplot.input_snapshot(input_movie[frame])
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34 fig = ppl.gcf()
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35 out_path = os.path.join(img_path, f"input_frame{frame}.png")
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36 fig.savefig(out_path, dpi=DPI)
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37 ppl.close(fig)
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38
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39 spyplot.phase_snapshot(results["phase"][frame])
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40 fig = ppl.gcf()
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41 out_path = os.path.join(img_path, f"phase_frame{frame}.png")
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42 fig.savefig(out_path, dpi=DPI)
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43 ppl.close(fig)
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44
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45 spyplot.period_snapshot(
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46 results["period"][frame], Wkwargs["Tmin"],
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47 Wkwargs["Tmax"], time_unit="a.u."
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48 )
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49
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50 fig = ppl.gcf()
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51 out_path = os.path.join(img_path, f"period_frame{frame}.png")
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52 fig.savefig(out_path, dpi=DPI)
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53 ppl.close(fig)
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54
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55 spyplot.amplitude_snapshot(results["amplitude"][frame])
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56 fig = ppl.gcf()
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57 out_path = os.path.join(img_path, f"amplitude_frame{frame}.png")
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58 fig.savefig(out_path, dpi=DPI)
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59 ppl.close(fig)
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60
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61 logger.info(f"Produced 4 snapshots for frame {frame}..")
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62
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63
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64 def produce_distr_plots(results, Wkwargs, img_path="."):
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65 """
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66 Output file names are:
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67
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68 period_distr.png, power_distr.png and phase_distr.png
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69 """
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70
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71 spyplot.period_distr_dynamics(results["period"], Wkwargs)
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72 fig = ppl.gcf()
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73 out_path = os.path.join(img_path, "period_distr.png")
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74 fig.savefig(out_path, dpi=DPI)
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75
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76 spyplot.power_distr_dynamics(results["power"], Wkwargs)
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77 fig = ppl.gcf()
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78 out_path = os.path.join(img_path, "power_distr.png")
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79 fig.savefig(out_path, dpi=DPI)
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80
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81 spyplot.phase_coherence_dynamics(results["phase"], Wkwargs)
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82 fig = ppl.gcf()
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83 out_path = os.path.join(img_path, "phase_distr.png")
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84 fig.savefig(out_path, dpi=DPI)
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85
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86 logger.info("Produced 3 distribution plots..")
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87
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88
1
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89 def create_html(frame_nums, par_str, html_fname="OutputReport.html"):
0
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90 """
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91 The html generated assumes the respective png's
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
92 have been created with 'produce_snapshots' and 'produce_distr_plots'
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
93 and can be found at the cwd (that's how Galaxy works..)
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
94 """
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
95
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
96 # -- create a gallery for every frame in frame_nums --
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
97
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
98 galleries = ""
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
99 for frame_num in frame_nums:
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
100 new_gal = f"""
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
101 <div class="FrameSlides">
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
102 <h3 style="text-align:center; color=#363333">
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
103 Frame Nr. {frame_num} </h3>
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
104
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
105 <div class="snapshot_gallery">
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
106
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
107 <figure class=”snapshot_gallery__item
1
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
iuc
parents: 0
diff changeset
108 snapshot_gallery__item--1" style="margin: 0 0">
0
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
109 <img src="input_frame{frame_num}.png" alt="The Input"
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
110 class="snapshot_gallery__img">
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
111 </figure>
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
112
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
113 <figure class=”snapshot_gallery__item
1
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
iuc
parents: 0
diff changeset
114 snapshot_gallery__item--2" style="margin: 0 0">
0
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
115 <img src="phase_frame{frame_num}.png" alt="Phase"
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
116 class="snapshot_gallery__img">
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
117 </figure>
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
118
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
119 <figure class=”snapshot_gallery__item
1
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
iuc
parents: 0
diff changeset
120 snapshot_gallery__item--3" style="margin: 0 0">
0
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
121 <img src="period_frame{frame_num}.png"
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
122 alt="Period" class="snapshot_gallery__img">
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
123 </figure>
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
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diff changeset
124
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
125 <figure class=”snapshot_gallery__item
1
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
iuc
parents: 0
diff changeset
126 snapshot_gallery__item--4" style="margin: 0 0">
0
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
127 <img src="amplitude_frame{frame_num}.png"
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
128 alt="Amplitude" class="snapshot_gallery__img">
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
129 </figure>
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
130 </div>
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
131 </div>
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
132 """
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
133 galleries += new_gal
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
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diff changeset
134
1
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
iuc
parents: 0
diff changeset
135 parameter_cells = ''
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
iuc
parents: 0
diff changeset
136 for line in par_str.split('\n'):
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
iuc
parents: 0
diff changeset
137 # last str is empty..
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
iuc
parents: 0
diff changeset
138 if not line:
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
iuc
parents: 0
diff changeset
139 break
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
iuc
parents: 0
diff changeset
140 par_name, par_val = line.split('->')
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
iuc
parents: 0
diff changeset
141 parameter_cells += f'''
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
iuc
parents: 0
diff changeset
142 <tr>
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
iuc
parents: 0
diff changeset
143 <td>{par_name}</td>
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
iuc
parents: 0
diff changeset
144 <td>{par_val}</td>
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
iuc
parents: 0
diff changeset
145 </tr>'''
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
iuc
parents: 0
diff changeset
146
0
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
147 html_string = f"""
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
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diff changeset
148 <html>
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
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diff changeset
149 <!-- this file got automatically created by 'output_report.py' -->
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
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diff changeset
150 <title>SpyBOAT Output Report</title>
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
151 <head>
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
152 <!-- that doesn't work with galaxy.. -->
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
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diff changeset
153 <!--link rel="stylesheet" href="styles.css"-->
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
154 <style type="text/css">
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
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diff changeset
155 body{{ margin:10 100; background:whitesmoke; }}
1
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
iuc
parents: 0
diff changeset
156 p{{
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
iuc
parents: 0
diff changeset
157 text-align: center;
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
iuc
parents: 0
diff changeset
158 margin-top: 0.05cm;
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
iuc
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diff changeset
159 margin-bottom: .05cm;
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
iuc
parents: 0
diff changeset
160 color:#2c2e2e;
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
iuc
parents: 0
diff changeset
161 }}
0
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
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diff changeset
162 .center{{
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
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163 text-align: center;
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
164 display: block;
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
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165 margin-left: auto;
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
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diff changeset
166 margin-right: auto;
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
167 width: 100%;}}
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
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diff changeset
168
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
169 /* matplotlib output at 1600x1200 */
1
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
iuc
parents: 0
diff changeset
170 .snapshot_gallery {{
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
iuc
parents: 0
diff changeset
171 margin: 0 0;
0
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
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172 text-align: center;
1
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
iuc
parents: 0
diff changeset
173 display: grid;
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
iuc
parents: 0
diff changeset
174 grid-template-columns: repeat(2,1fr);
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
iuc
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diff changeset
175 grid-template-rows: repeat(2,27vw);
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
iuc
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diff changeset
176 grid-gap: 5px;
0
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
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diff changeset
177 }}
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
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178
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
parents:
diff changeset
179 .snapshot_gallery__img {{
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
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diff changeset
180 width: 100%;
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
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181 height: 100%;
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
iuc
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182 object-fit: contain;
1
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
iuc
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183 margin-top: 5px;
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
iuc
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184 margin-bottom: 15px;
0
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185 }}
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186 .subheader{{
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187 text-align:center;
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188 font-size: 160%;
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189 color:#363333;}}
1
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190 .centerimg{{
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191 text-align: center;
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192 width: 65%;
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193 max-width: 400px;
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194 display: block;
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195 padding: 10px;
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196 margin-left: auto;
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197 margin-right: auto;
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198 }}
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199
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200 .div_distr{{
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201 text-align: center;
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202 border-radius: 25px;
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203 margin-top: 1cm;
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204 margin: auto;
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205 margin-bottom: 0.5cm;
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206 background-color: #cce1e3;
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207 max-width: 550px;
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208 }}
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209
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210 .partable{{
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211 width: 70%;
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212 margin-left: auto;
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213 margin-right: auto;
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214 }}
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215
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
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216 tr, td{{
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217 color:#2c2e2e;
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218 font-size: 110%;
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219 }}
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
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220
0
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221 </style>
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222 </head>
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223 <body>
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224 <h1 style="text-align:center; color:#363333">SpyBOAT Results Report</h1>
1
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225 <hr style="width:70%">
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226
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
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227 <h1 class="subheader"> Spatial Summary Statistics </h1>
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228 <div class="div_distr">
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229 <img src="period_distr.png" alt="Period"
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230 class="centerimg">
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231 <p> Median and quartiles of the estimated periods for each frame </p>
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232 </div>
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233
0
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234
1
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
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235 <div class="div_distr">
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236 <img src="power_distr.png" alt="Period"
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237 class="centerimg">
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238 <p> Median and quartiles of the ridge wavelet power for each frame </p>
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239 </div>
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
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240 <div class="div_distr">
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
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241 <img src="phase_distr.png" alt="Period"
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242 class="centerimg">
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
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243 <p> Kuramoto order parameter for the phases estimated for each frame </p>
0
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244
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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245 </div>
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246
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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247 <h1 class="subheader"> Output Movie Snapshots </h1>
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248
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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249 <!-- trigger the javascript at the end--->
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250 <div class="center">
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251 <button class="w3-button" onclick="plusDivs(-1)">&#10094; Prev</button>
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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252 <button class="w3-button" onclick="plusDivs(1)">Next &#10095;</button>
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253 </div>
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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254
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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255 <!-- defines all elements of the "FrameSlides" class --->
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256 {galleries}
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257 </div>
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258
1
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259 <h1 class="subheader"> Parameters </h1>
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260 <div class="div_distr">
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261 <table border = "1" class="partable">
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262 <tr>
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263 <th>Name</th>
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264 <th>Value</th>
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265 </tr>
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266 {parameter_cells}
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267 </table>
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
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268 </div>
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269
0
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270 <!-- javascript with escaped '{{'--->
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271 <script>
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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272 var slideIndex = 1;
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273 showDivs(slideIndex);
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274
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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275 function plusDivs(n) {{
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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276 showDivs(slideIndex += n);
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277 }}
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278
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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279 function showDivs(n) {{
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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280 var i;
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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281 var x = document.getElementsByClassName("FrameSlides");
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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282 if (n > x.length) {{slideIndex = 1}}
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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283 if (n < 1) {{slideIndex = x.length}} ;
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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284 for (i = 0; i < x.length; i++) {{
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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285 x[i].style.display = "none";
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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286 }}
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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287 x[slideIndex-1].style.display = "block";
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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288 }}
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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289 </script>
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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290 </body>
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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291 </html>
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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292 """
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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293
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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294 with open(html_fname, "w") as OUT:
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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295 OUT.write(html_string)
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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296
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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297 logger.info("Created html report")
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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298 return html_string
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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299
76733d05d8ef "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 5c60a414c785246371beac23ce52d8bbab3602d1"
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300 # for local testing
1
639d2031d998 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 88e9d9a220d160f55e0472719bb463143a4eefa5"
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301 # create_html([0,20], 'par1 -> val1\n verylongpar2 -> val2')