Mercurial > repos > iuc > stacks2_gstacks

annotate test-data/procrad/process_radtags_paired_no_barcode.out @ 5:f6e91108b7b1 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
author iuc
date Thu, 14 Apr 2022 09:32:27 +0000
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5
f6e91108b7b1 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
iuc
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diff changeset
1 process_radtags -p stacks_inputs/ --paired -i gzfastq -y gzfasta -o stacks_outputs -e ecoRI
f6e91108b7b1 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
iuc
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diff changeset
2 File Retained Reads Low Quality Barcode Not Found RAD cutsite Not Found Total
f6e91108b7b1 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
iuc
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3 reads_R1_0.fastq.gz 7000 0 0 7000 14000
f6e91108b7b1 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
iuc
parents:
diff changeset
4
f6e91108b7b1 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
iuc
parents:
diff changeset
5 Total Sequences 14000
f6e91108b7b1 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
iuc
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diff changeset
6 Barcode Not Found 0
f6e91108b7b1 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
iuc
parents:
diff changeset
7 Low Quality 0
f6e91108b7b1 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
iuc
parents:
diff changeset
8 RAD Cutsite Not Found 7000
f6e91108b7b1 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
iuc
parents:
diff changeset
9 Retained Reads 7000