Mercurial > repos > iuc > stacks2_gstacks
view test-data/procrad/process_radtags_paired.out @ 7:fa51dc5e8386 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit feda4e2ea70c013fcddd1dbdeab73158fe9c86a4
author | iuc |
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date | Mon, 23 May 2022 17:54:01 +0000 |
parents | f6e91108b7b1 |
children |
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process_radtags v2.55, executed 2022-01-04 19:50:15 (zlib-1.2.11) process_radtags -p stacks_inputs/ --paired -i fastq -b /tmp/tmp1omqb2_d/files/2/4/2/dataset_24218646-a203-4cdb-b2b6-7e572d65add7.dat --inline_null -y gzfasta -o stacks_outputs --len_limit 50 -D -e ecoRI File Retained Reads Low Quality Barcode Not Found RAD cutsite Not Found Total reads_R1_0.fastq 9222 0 0 4778 14000 Total Sequences 14000 Barcode Not Found 0 Low Quality 0 RAD Cutsite Not Found 4778 Retained Reads 9222 Barcode Filename Total NoRadTag LowQuality Retained ATGGGG PopA_01 320 94 0 226 GGGTAA PopA_02 292 86 0 206 AGGAAA PopA_03 448 132 0 316 TTTAAG PopA_04 336 146 0 190 GGTGTG PopA_05 440 154 0 286 TGATGT PopA_06 428 147 0 281 GGTTGT PopA_07 364 137 0 227 ATAAGT PopA_08 464 164 0 300 AAGATA PopA_09 364 134 0 230 TGTGAG PopA_10 336 128 0 208 ATAGTT PopA_11 400 132 0 268 GGAAGG PopA_12 356 136 0 220 TTTGTG PopA_13 380 152 0 228 TTAAAT PopA_14 332 96 0 236 AATAAG PopA_15 304 74 0 230 AAGAGG PopA_16 348 112 0 236 TAGTGT PopA_17 484 146 0 338 TGGAAG PopA_18 296 98 0 198 GGGTTG PopA_19 220 64 0 156 CATCAT PopA_20 356 144 0 212 GGAGAG PopB_20 420 142 0 278 GTTTTA PopB_01 272 90 0 182 TGATAA PopB_02 332 108 0 224 GTTGAT PopB_03 296 74 0 222 AGATTA PopB_04 360 156 0 204 GTATAG PopB_05 272 106 0 166 TTGGGA PopB_06 332 112 0 220 ATATAT PopB_07 484 156 0 328 GATGAG PopB_08 416 152 0 264 GGGAAT PopB_09 396 126 0 270 AGTAAT PopB_10 328 120 0 208 GGGATA PopB_11 292 90 0 202 GAGAAG PopB_12 324 110 0 214 AGTAGA PopB_13 408 146 0 262 AAGGAT PopB_14 360 128 0 232 AGGGTA PopB_15 268 72 0 196 TGTTTT PopB_16 276 98 0 178 ATGATG PopB_17 284 100 0 184 GAGTTA PopB_18 320 112 0 208 ATGTAG PopB_19 292 104 0 188 Sequences not recorded Barcode Total