Mercurial > repos > iuc > stacks2_tsv2bam

comparison test-data/gstacks/gstacks.log.distribs @ 4:69842dd5aa48 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 75f83e7b16127aecc68a58df2cb75062f2a9296a"
author iuc
date Wed, 01 Sep 2021 11:32:48 +0000
parents bf0e43ab0416
children
comparison
equal deleted inserted replaced
3:a9c34a289493 4:69842dd5aa48
17 17
18 BEGIN clockings 18 BEGIN clockings
19 Num. threads: 1 19 Num. threads: 1
20 Parallel time: 0.0 20 Parallel time: 0.0
21 Average thread time spent: 21 Average thread time spent:
22 0.0 reading (3.0%) 22 0.0 reading (2.8%)
23 0.0 processing (95.7%) 23 0.0 processing (95.9%)
24 0.0 pre-alignments block (74.4%) 24 0.0 pre-alignments block (76.1%)
25 0.0 reformatting fw-reads (0.2%) 25 0.0 reformatting fw-reads (0.1%)
26 0.0 assembling (27.3%) 26 0.0 assembling (17.5%)
27 0.0 initializing alignments (8.7%) 27 0.0 initializing alignments (4.0%)
28 0.0 aligning (36.6%) 28 0.0 aligning (52.9%)
29 0.0 merging read pairs (1.6%) 29 0.0 merging read pairs (1.6%)
30 0.0 post-alignments block (19.8%) 30 0.0 post-alignments block (18.7%)
31 0.0 filtering reads (0.0%) 31 0.0 filtering reads (0.0%)
32 0.0 counting nucleotides (3.2%) 32 0.0 counting nucleotides (2.8%)
33 0.0 genotyping (1.5%) 33 0.0 genotyping (1.2%)
34 0.0 haplotyping (0.9%) 34 0.0 haplotyping (1.0%)
35 0.0 computing consensus (0.1%) 35 0.0 computing consensus (0.1%)
36 0.0 building_fa (0.1%) 36 0.0 building_fa (0.1%)
37 0.0 building_vcf (14.0%) 37 0.0 building_vcf (13.4%)
38 0.0 writing_fa (0.0%) 38 0.0 writing_fa (0.0%)
39 0.0 writing_vcf (0.9%) 39 0.0 writing_vcf (0.9%)
40 0.0 clocking (0.1%) 40 0.0 clocking (0.2%)
41 Total time spent writing vcf: 0.0 (0.8%) 41 Total time spent writing vcf: 0.0 (0.9%)
42 VCFwrite block size: mean=1.0(n=3); max=1 42 VCFwrite block size: mean=1.0(n=3); max=1
43 END clockings 43 END clockings