diff test-data/procrad/process_radtags.out @ 0:a8a0cd05d47d draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 6ecb1ddafc5575514f9929430e5452027ad02439
author iuc
date Sun, 21 May 2017 18:54:11 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/procrad/process_radtags.out	Sun May 21 18:54:11 2017 -0400
@@ -0,0 +1,56 @@
+process_radtags -1 /tmp/tmpTg8Tep/files/000/dataset_1.dat -2 /tmp/tmpTg8Tep/files/000/dataset_2.dat -i fastq -b /tmp/tmpTg8Tep/files/000/dataset_3.dat --inline_null -e ecoRI -y fastq -D -w 0.15 -q -s 10 -o galaxy_outputs
+process_radtags version 1.37 executed 2016-03-31 10:44:24
+
+File	Retained Reads	Low Quality	Ambiguous Barcodes	Ambiguous RAD-Tag	Total
+dataset_1.dat	1767	0	0	233	2000
+
+Total Sequences	2000
+Ambiguous Barcodes	0
+Low Quality	0
+Ambiguous RAD-Tag	233
+Retained Reads	1767
+
+Barcode	Filename	Total	No RadTag	Low Quality	Retained
+ATGGGG	PopA_01	56	0	0	56
+GGGTAA	PopA_02	84	14	0	70
+AGGAAA	PopA_03	76	22	0	54
+TTTAAG	PopA_04	52	24	0	28
+GGTGTG	PopA_05	64	10	0	54
+TGATGT	PopA_06	100	32	0	68
+GGTTGT	PopA_07	100	31	0	69
+ATAAGT	PopA_08	84	12	0	72
+AAGATA	PopA_09	68	26	0	42
+TGTGAG	PopA_10	0	0	0	0
+ATAGTT	PopA_11	52	0	0	52
+GGAAGG	PopA_12	36	0	0	36
+TTTGTG	PopA_13	44	0	0	44
+TTAAAT	PopA_14	52	0	0	52
+AATAAG	PopA_15	52	0	0	52
+AAGAGG	PopA_16	28	0	0	28
+TAGTGT	PopA_17	56	0	0	56
+TGGAAG	PopA_18	72	0	0	72
+GGGTTG	PopA_19	36	0	0	36
+CATCAT	PopA_20	76	24	0	52
+GGAGAG	PopB_20	44	0	0	44
+GTTTTA	PopB_01	20	0	0	20
+TGATAA	PopB_02	64	0	0	64
+GTTGAT	PopB_03	40	0	0	40
+AGATTA	PopB_04	20	0	0	20
+GTATAG	PopB_05	12	0	0	12
+TTGGGA	PopB_06	52	0	0	52
+ATATAT	PopB_07	40	0	0	40
+GATGAG	PopB_08	64	0	0	64
+GGGAAT	PopB_09	44	0	0	44
+AGTAAT	PopB_10	52	0	0	52
+GGGATA	PopB_11	48	0	0	48
+GAGAAG	PopB_12	28	0	0	28
+AGTAGA	PopB_13	44	0	0	44
+AAGGAT	PopB_14	64	22	0	42
+AGGGTA	PopB_15	64	0	0	64
+TGTTTT	PopB_16	8	0	0	8
+ATGATG	PopB_17	0	0	0	0
+GAGTTA	PopB_18	44	0	0	44
+ATGTAG	PopB_19	60	16	0	44
+
+Sequences not recorded
+Barcode	Total