Mercurial > repos > iuc > stringtie

annotate test-data/stringtie_out11.gtf @ 18:258d696dbd7e draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
author iuc
date Sat, 25 Sep 2021 18:20:22 +0000
parents
children cef79931dda5
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18
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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diff changeset
1 # stringtie /tmp/tmpgqe071sy/files/5/f/e/dataset_5feb7af0-84a3-4590-975e-97b02b89c256.dat -L -E 30 -o /tmp/tmpgqe071sy/files/d/9/c/dataset_d9c60f6e-5062-4d09-a7e3-05b74adcebca.dat -p 1 -G guide.gff -b ./special_de_output/sample1/ -f 0.15 -m 200 -a 10 -j 1 -c 2 -g 50 -M 0.95
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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diff changeset
2 # StringTie version 2.1.7
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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3 chr19 StringTie transcript 567221 571736 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.1"; cov "5.617600"; FPKM "37220.644531"; TPM "77823.132812";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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4 chr19 StringTie exon 567221 567648 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "1"; cov "5.815421";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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5 chr19 StringTie exon 571440 571596 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "2"; cov "5.859873";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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6 chr19 StringTie exon 571697 571736 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "3"; cov "2.550000";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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7 chr19 StringTie transcript 571310 583493 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.1"; cov "5.416068"; FPKM "35885.347656"; TPM "75031.218750";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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8 chr19 StringTie exon 571310 571579 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "1"; cov "4.559259";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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9 chr19 StringTie exon 580379 580461 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "2"; cov "5.556142";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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10 chr19 StringTie exon 580646 580782 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "3"; cov "5.689962";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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11 chr19 StringTie exon 581315 581610 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "4"; cov "5.556142";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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12 chr19 StringTie exon 582514 582582 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "5"; cov "5.556142";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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13 chr19 StringTie exon 582750 583493 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "6"; cov "5.592226";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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14 chr19 StringTie transcript 572567 583493 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.2"; cov "6.175826"; FPKM "40919.292969"; TPM "85556.492188";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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15 chr19 StringTie exon 572567 572701 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "1"; cov "3.325926";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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16 chr19 StringTie exon 577774 578121 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "2"; cov "6.436781";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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17 chr19 StringTie exon 579500 579656 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "3"; cov "7.000000";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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18 chr19 StringTie exon 580379 580461 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "4"; cov "7.443858";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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19 chr19 StringTie exon 580646 580782 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "5"; cov "6.631207";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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20 chr19 StringTie exon 581315 581610 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "6"; cov "6.443858";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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21 chr19 StringTie exon 582514 582582 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "7"; cov "6.443858";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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22 chr19 StringTie exon 582750 583493 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "8"; cov "6.040156";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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23 chr19 StringTie transcript 589891 617159 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; cov "19.938414"; FPKM "132106.343750"; TPM "276215.781250";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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24 chr19 StringTie exon 589891 590577 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "1"; cov "18.537119";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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25 chr19 StringTie exon 603544 603967 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "2"; cov "21.000000";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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26 chr19 StringTie exon 605061 605222 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "3"; cov "21.000000";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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27 chr19 StringTie exon 607964 608182 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "4"; cov "21.000000";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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28 chr19 StringTie exon 610259 610405 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "5"; cov "21.000000";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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29 chr19 StringTie exon 613248 613488 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "6"; cov "21.000000";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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30 chr19 StringTie exon 613852 614016 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "7"; cov "21.000000";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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31 chr19 StringTie exon 615795 617159 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "8"; cov "19.587545";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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32 chr19 StringTie transcript 617224 618760 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.1"; cov "29.150192"; FPKM "193141.000000"; TPM "403830.687500";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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33 chr19 StringTie exon 617224 617323 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "1"; cov "20.289286";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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34 chr19 StringTie exon 617419 617480 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "2"; cov "28.788761";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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35 chr19 StringTie exon 617570 618586 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "3"; cov "30.891500";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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36 chr19 StringTie exon 618705 618760 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "4"; cov "13.750000";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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37 chr19 StringTie transcript 617224 633601 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.2"; cov "5.886094"; FPKM "38999.609375"; TPM "81542.703125";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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38 chr19 StringTie exon 617224 617323 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "1"; cov "1.560714";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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39 chr19 StringTie exon 617419 617480 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "2"; cov "1.985432";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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40 chr19 StringTie exon 617570 617655 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "3"; cov "4.996770";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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41 chr19 StringTie exon 617777 617849 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "4"; cov "5.994817";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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42 chr19 StringTie exon 618488 618586 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "5"; cov "5.525252";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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43 chr19 StringTie exon 618705 618760 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "6"; cov "6.875000";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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44 chr19 StringTie exon 618997 619110 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "7"; cov "6.000000";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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45 chr19 StringTie exon 619210 619296 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "8"; cov "6.000000";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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46 chr19 StringTie exon 619586 619765 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "9"; cov "6.000000";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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47 chr19 StringTie exon 619958 620080 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "10"; cov "7.000000";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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48 chr19 StringTie exon 620365 620487 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "11"; cov "7.000000";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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49 chr19 StringTie exon 621058 621846 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "12"; cov "6.751584";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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50 chr19 StringTie exon 622149 622373 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "13"; cov "6.000000";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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51 chr19 StringTie exon 622582 622752 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "14"; cov "6.000000";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
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52 chr19 StringTie exon 622821 622985 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "15"; cov "6.000000";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
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53 chr19 StringTie exon 623454 623603 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "16"; cov "6.000000";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
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54 chr19 StringTie exon 624719 624905 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "17"; cov "6.000000";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
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55 chr19 StringTie exon 625124 625254 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "18"; cov "6.000000";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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56 chr19 StringTie exon 629540 630168 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "19"; cov "5.941176";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
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57 chr19 StringTie exon 632834 632938 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "20"; cov "5.000000";
258d696dbd7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 999b45e8bcf810f871cda58cb66573f7d6ae37f3"
iuc
parents:
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58 chr19 StringTie exon 633425 633601 1000 - . gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "21"; cov "3.988701";