view test-data/stringtie_out11.gtf @ 24:cbf488da3b2c draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 8dc7b89b32a9e86c48e9ef7078703ae277bdaf96
author iuc
date Mon, 13 May 2024 14:07:55 +0000
parents 8eb8750070d4
children
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# stringtie /tmp/tmp0_r_zs0r/files/4/d/0/dataset_4d035599-e7f2-46dd-81bc-b3b05b7deddb.dat -L -E 30 -o /tmp/tmp0_r_zs0r/job_working_directory/000/28/outputs/dataset_0f86a5b1-39e9-428b-9707-403ec325a6d1.dat -p 1 -G guide.gff -b ./special_de_output/sample1/ -f 0.15 -m 200 -a 10 -j 1 -c 1 -g 50 -M 1.0
# StringTie version 2.2.3
chr19	StringTie	transcript	567221	571736	1000	-	.	gene_id "STRG.1"; transcript_id "STRG.1.1"; cov "5.617600"; FPKM "37220.644531"; TPM "77823.132812";
chr19	StringTie	exon	567221	567648	1000	-	.	gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "1"; cov "5.815421";
chr19	StringTie	exon	571440	571596	1000	-	.	gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "2"; cov "5.859873";
chr19	StringTie	exon	571697	571736	1000	-	.	gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "3"; cov "2.550000";
chr19	StringTie	transcript	571310	583493	1000	+	.	gene_id "STRG.2"; transcript_id "STRG.2.1"; cov "5.416068"; FPKM "35885.347656"; TPM "75031.218750";
chr19	StringTie	exon	571310	571579	1000	+	.	gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "1"; cov "4.559259";
chr19	StringTie	exon	580379	580461	1000	+	.	gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "2"; cov "5.556142";
chr19	StringTie	exon	580646	580782	1000	+	.	gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "3"; cov "5.689962";
chr19	StringTie	exon	581315	581610	1000	+	.	gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "4"; cov "5.556142";
chr19	StringTie	exon	582514	582582	1000	+	.	gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "5"; cov "5.556142";
chr19	StringTie	exon	582750	583493	1000	+	.	gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "6"; cov "5.592226";
chr19	StringTie	transcript	572567	583493	1000	+	.	gene_id "STRG.2"; transcript_id "STRG.2.2"; cov "6.175826"; FPKM "40919.292969"; TPM "85556.492188";
chr19	StringTie	exon	572567	572701	1000	+	.	gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "1"; cov "3.325926";
chr19	StringTie	exon	577774	578121	1000	+	.	gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "2"; cov "6.436781";
chr19	StringTie	exon	579500	579656	1000	+	.	gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "3"; cov "7.000000";
chr19	StringTie	exon	580379	580461	1000	+	.	gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "4"; cov "7.443858";
chr19	StringTie	exon	580646	580782	1000	+	.	gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "5"; cov "6.631207";
chr19	StringTie	exon	581315	581610	1000	+	.	gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "6"; cov "6.443858";
chr19	StringTie	exon	582514	582582	1000	+	.	gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "7"; cov "6.443858";
chr19	StringTie	exon	582750	583493	1000	+	.	gene_id "STRG.2"; transcript_id "STRG.2.2"; exon_number "8"; cov "6.040156";
chr19	StringTie	transcript	589891	617159	1000	+	.	gene_id "STRG.3"; transcript_id "STRG.3.1"; cov "19.938414"; FPKM "132106.343750"; TPM "276215.781250";
chr19	StringTie	exon	589891	590577	1000	+	.	gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "1"; cov "18.537119";
chr19	StringTie	exon	603544	603967	1000	+	.	gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "2"; cov "21.000000";
chr19	StringTie	exon	605061	605222	1000	+	.	gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "3"; cov "21.000000";
chr19	StringTie	exon	607964	608182	1000	+	.	gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "4"; cov "21.000000";
chr19	StringTie	exon	610259	610405	1000	+	.	gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "5"; cov "21.000000";
chr19	StringTie	exon	613248	613488	1000	+	.	gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "6"; cov "21.000000";
chr19	StringTie	exon	613852	614016	1000	+	.	gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "7"; cov "21.000000";
chr19	StringTie	exon	615795	617159	1000	+	.	gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "8"; cov "19.587545";
chr19	StringTie	transcript	617224	618760	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.1"; cov "29.150192"; FPKM "193141.000000"; TPM "403830.687500";
chr19	StringTie	exon	617224	617323	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "1"; cov "20.289286";
chr19	StringTie	exon	617419	617480	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "2"; cov "28.788761";
chr19	StringTie	exon	617570	618586	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "3"; cov "30.891500";
chr19	StringTie	exon	618705	618760	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "4"; cov "13.750000";
chr19	StringTie	transcript	617224	633601	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.2"; cov "5.886094"; FPKM "38999.609375"; TPM "81542.703125";
chr19	StringTie	exon	617224	617323	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "1"; cov "1.560714";
chr19	StringTie	exon	617419	617480	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "2"; cov "1.985432";
chr19	StringTie	exon	617570	617655	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "3"; cov "4.996770";
chr19	StringTie	exon	617777	617849	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "4"; cov "5.994817";
chr19	StringTie	exon	618488	618586	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "5"; cov "5.525252";
chr19	StringTie	exon	618705	618760	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "6"; cov "6.875000";
chr19	StringTie	exon	618997	619110	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "7"; cov "6.000000";
chr19	StringTie	exon	619210	619296	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "8"; cov "6.000000";
chr19	StringTie	exon	619586	619765	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "9"; cov "6.000000";
chr19	StringTie	exon	619958	620080	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "10"; cov "7.000000";
chr19	StringTie	exon	620365	620487	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "11"; cov "7.000000";
chr19	StringTie	exon	621058	621846	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "12"; cov "6.751584";
chr19	StringTie	exon	622149	622373	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "13"; cov "6.000000";
chr19	StringTie	exon	622582	622752	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "14"; cov "6.000000";
chr19	StringTie	exon	622821	622985	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "15"; cov "6.000000";
chr19	StringTie	exon	623454	623603	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "16"; cov "6.000000";
chr19	StringTie	exon	624719	624905	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "17"; cov "6.000000";
chr19	StringTie	exon	625124	625254	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "18"; cov "6.000000";
chr19	StringTie	exon	629540	630168	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "19"; cov "5.941176";
chr19	StringTie	exon	632834	632938	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "20"; cov "5.000000";
chr19	StringTie	exon	633425	633601	1000	-	.	gene_id "STRG.4"; transcript_id "STRG.4.2"; exon_number "21"; cov "3.988701";