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annotate test-data/stringtie_out2_re.gtf @ 23:8eb8750070d4 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 252f4cccd66513c985b3df9480d73c8b9f994520
author iuc
date Tue, 30 Apr 2024 11:53:08 +0000
parents ae618321f34a
children cbf488da3b2c
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23
8eb8750070d4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 252f4cccd66513c985b3df9480d73c8b9f994520
iuc
parents: 22
diff changeset
1 # stringtie /tmp/tmpm2qmdax_/files/8/7/1/dataset_871b229a-6bb9-4fea-ad17-d71634870366.dat -o /tmp/tmpm2qmdax_/job_working_directory/000/4/outputs/dataset_3a880427-cc94-440b-974f-61adfa148f55.dat -p 1 -f 0.17 -m 200 -a 10 -j 1 -c 1 -g 50 -M 1.0
8eb8750070d4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 252f4cccd66513c985b3df9480d73c8b9f994520
iuc
parents: 22
diff changeset
2 # StringTie version 2.2.2
8eb8750070d4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 252f4cccd66513c985b3df9480d73c8b9f994520
iuc
parents: 22
diff changeset
3 test_chromosome StringTie transcript 53 550 1000 + . gene_id "STRG.1"; transcript_id "STRG.1.1"; cov "45.241611"; FPKM "3314403.750000"; TPM "1000000.000000";
8eb8750070d4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 252f4cccd66513c985b3df9480d73c8b9f994520
iuc
parents: 22
diff changeset
4 test_chromosome StringTie exon 53 250 1000 + . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "1"; cov "49.237373";
8eb8750070d4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 252f4cccd66513c985b3df9480d73c8b9f994520
iuc
parents: 22
diff changeset
5 test_chromosome StringTie exon 351 400 1000 + . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "2"; cov "53.000004";
8eb8750070d4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 252f4cccd66513c985b3df9480d73c8b9f994520
iuc
parents: 22
diff changeset
6 test_chromosome StringTie exon 501 550 1000 + . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "3"; cov "21.660000";