Mercurial > repos > iuc > stringtie
annotate test-data/stringtie_out6.gtf @ 24:cbf488da3b2c draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 8dc7b89b32a9e86c48e9ef7078703ae277bdaf96
author | iuc |
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date | Mon, 13 May 2024 14:07:55 +0000 |
parents | 8eb8750070d4 |
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24
cbf488da3b2c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 8dc7b89b32a9e86c48e9ef7078703ae277bdaf96
iuc
parents:
23
diff
changeset
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1 # stringtie /tmp/tmp0_r_zs0r/files/6/f/0/dataset_6f0a4741-c3ba-4fea-8358-8d0cb87734d2.dat -o /tmp/tmp0_r_zs0r/job_working_directory/000/16/outputs/dataset_b53ba999-250c-412b-8076-fd66d941f98f.dat -p 1 -G guide.gff -C /tmp/tmp0_r_zs0r/job_working_directory/000/16/outputs/dataset_300c6a87-4de4-46cc-87c0-47ac26c85e86.dat -e -b ./special_de_output/sample1/ -f 0.01 -m 200 -a 10 -j 1 -c 1 -g 50 -M 1.0 |
cbf488da3b2c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 8dc7b89b32a9e86c48e9ef7078703ae277bdaf96
iuc
parents:
23
diff
changeset
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2 # StringTie version 2.2.3 |
23
8eb8750070d4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 252f4cccd66513c985b3df9480d73c8b9f994520
iuc
parents:
22
diff
changeset
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3 test_chromosome StringTie transcript 53 550 1000 + . gene_id "CUFF.1"; transcript_id "CUFF.1.1"; cov "45.241611"; FPKM "3314403.750000"; TPM "1000000.000000"; |
8eb8750070d4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 252f4cccd66513c985b3df9480d73c8b9f994520
iuc
parents:
22
diff
changeset
|
4 test_chromosome StringTie exon 53 250 1000 + . gene_id "CUFF.1"; transcript_id "CUFF.1.1"; exon_number "1"; cov "49.237373"; |
8eb8750070d4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 252f4cccd66513c985b3df9480d73c8b9f994520
iuc
parents:
22
diff
changeset
|
5 test_chromosome StringTie exon 351 400 1000 + . gene_id "CUFF.1"; transcript_id "CUFF.1.1"; exon_number "2"; cov "53.000004"; |
8eb8750070d4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 252f4cccd66513c985b3df9480d73c8b9f994520
iuc
parents:
22
diff
changeset
|
6 test_chromosome StringTie exon 501 550 1000 + . gene_id "CUFF.1"; transcript_id "CUFF.1.1"; exon_number "3"; cov "21.660000"; |