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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 8dc7b89b32a9e86c48e9ef7078703ae277bdaf96
author iuc
date Mon, 13 May 2024 14:07:55 +0000
parents 8eb8750070d4
children
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# stringtie /tmp/tmp0_r_zs0r/files/6/f/0/dataset_6f0a4741-c3ba-4fea-8358-8d0cb87734d2.dat -o /tmp/tmp0_r_zs0r/job_working_directory/000/16/outputs/dataset_b53ba999-250c-412b-8076-fd66d941f98f.dat -p 1 -G guide.gff -C /tmp/tmp0_r_zs0r/job_working_directory/000/16/outputs/dataset_300c6a87-4de4-46cc-87c0-47ac26c85e86.dat -e -b ./special_de_output/sample1/ -f 0.01 -m 200 -a 10 -j 1 -c 1 -g 50 -M 1.0
# StringTie version 2.2.3
test_chromosome	StringTie	transcript	53	550	1000	+	.	gene_id "CUFF.1"; transcript_id "CUFF.1.1"; cov "45.241611"; FPKM "3314403.750000"; TPM "1000000.000000";
test_chromosome	StringTie	exon	53	250	1000	+	.	gene_id "CUFF.1"; transcript_id "CUFF.1.1"; exon_number "1"; cov "49.237373";
test_chromosome	StringTie	exon	351	400	1000	+	.	gene_id "CUFF.1"; transcript_id "CUFF.1.1"; exon_number "2"; cov "53.000004";
test_chromosome	StringTie	exon	501	550	1000	+	.	gene_id "CUFF.1"; transcript_id "CUFF.1.1"; exon_number "3"; cov "21.660000";