Mercurial > repos > iuc > stringtie

comparison test-data/stringtie_out11.gtf @ 24:cbf488da3b2c draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 8dc7b89b32a9e86c48e9ef7078703ae277bdaf96
author iuc
date Mon, 13 May 2024 14:07:55 +0000
parents 8eb8750070d4
children
comparison
equal deleted inserted replaced
23:8eb8750070d4 24:cbf488da3b2c
1 # stringtie /tmp/tmpm2qmdax_/files/c/e/f/dataset_cefc5152-4ac0-4e7e-9223-1b55c7b7ac85.dat -L -E 30 -o /tmp/tmpm2qmdax_/job_working_directory/000/28/outputs/dataset_5597b8ed-94cb-4345-9b86-8ad715fbe328.dat -p 1 -G guide.gff -b ./special_de_output/sample1/ -f 0.15 -m 200 -a 10 -j 1 -c 1 -g 50 -M 1.0 1 # stringtie /tmp/tmp0_r_zs0r/files/4/d/0/dataset_4d035599-e7f2-46dd-81bc-b3b05b7deddb.dat -L -E 30 -o /tmp/tmp0_r_zs0r/job_working_directory/000/28/outputs/dataset_0f86a5b1-39e9-428b-9707-403ec325a6d1.dat -p 1 -G guide.gff -b ./special_de_output/sample1/ -f 0.15 -m 200 -a 10 -j 1 -c 1 -g 50 -M 1.0
2 # StringTie version 2.2.2 2 # StringTie version 2.2.3
3 chr19 StringTie transcript 567221 571736 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.1"; cov "5.617600"; FPKM "37220.644531"; TPM "77823.132812"; 3 chr19 StringTie transcript 567221 571736 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.1"; cov "5.617600"; FPKM "37220.644531"; TPM "77823.132812";
4 chr19 StringTie exon 567221 567648 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "1"; cov "5.815421"; 4 chr19 StringTie exon 567221 567648 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "1"; cov "5.815421";
5 chr19 StringTie exon 571440 571596 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "2"; cov "5.859873"; 5 chr19 StringTie exon 571440 571596 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "2"; cov "5.859873";
6 chr19 StringTie exon 571697 571736 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "3"; cov "2.550000"; 6 chr19 StringTie exon 571697 571736 1000 - . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "3"; cov "2.550000";
7 chr19 StringTie transcript 571310 583493 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.1"; cov "5.416068"; FPKM "35885.347656"; TPM "75031.218750"; 7 chr19 StringTie transcript 571310 583493 1000 + . gene_id "STRG.2"; transcript_id "STRG.2.1"; cov "5.416068"; FPKM "35885.347656"; TPM "75031.218750";