Mercurial > repos > iuc > stringtie
diff test-data/stringtie_out6.gtf @ 10:c84d44519b2e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit b78c073ab258852730fc9af1cd4862d571459103
| author | iuc |
|---|---|
| date | Tue, 04 Apr 2017 12:58:27 -0400 |
| parents | d0bb240d7525 |
| children | 76d290331481 |
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--- a/test-data/stringtie_out6.gtf Tue Mar 21 03:07:22 2017 -0400 +++ b/test-data/stringtie_out6.gtf Tue Apr 04 12:58:27 2017 -0400 @@ -1,3 +1,6 @@ -Gene ID Gene Name Reference Strand Start End Coverage FPKM TPM -CUFF.1 - test_chromosome + 53 550 45.791946 3354721.250000 1000000.062500 -STRG.1 - test_chromosome + 53 550 45.791946 3354721.250000 1000000.062500 +# stringtie /tmp/tmpJfKWNy/files/000/dataset_22.dat -o /tmp/tmpJfKWNy/files/000/dataset_24.dat -p 1 -C /tmp/tmpJfKWNy/files/000/dataset_25.dat -G /tmp/tmpJfKWNy/files/000/dataset_23.dat -e -b ./special_de_output/sample1/ +# StringTie version 1.3.3 +test_chromosome StringTie transcript 53 550 1000 + . gene_id "CUFF.1"; transcript_id "CUFF.1.1"; cov "45.795296"; FPKM "3354966.750000"; TPM "1000000.000000"; +test_chromosome StringTie exon 53 250 1000 + . gene_id "CUFF.1"; transcript_id "CUFF.1.1"; exon_number "1"; cov "49.777779"; +test_chromosome StringTie exon 351 400 1000 + . gene_id "CUFF.1"; transcript_id "CUFF.1.1"; exon_number "2"; cov "54.160004"; +test_chromosome StringTie exon 501 550 1000 + . gene_id "CUFF.1"; transcript_id "CUFF.1.1"; exon_number "3"; cov "21.660000";