Mercurial > repos > iuc > stringtie

view test-data/stringtie_out6.gtf @ 23:8eb8750070d4 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 252f4cccd66513c985b3df9480d73c8b9f994520
author iuc
date Tue, 30 Apr 2024 11:53:08 +0000
parents ae618321f34a
children cbf488da3b2c
line wrap: on
line source

# stringtie /tmp/tmpm2qmdax_/files/5/f/e/dataset_5fe68ff0-f093-4d09-86ec-2e1a279bb301.dat -o /tmp/tmpm2qmdax_/job_working_directory/000/16/outputs/dataset_821eef87-9397-4b49-8860-910104445af9.dat -p 1 -G guide.gff -C /tmp/tmpm2qmdax_/job_working_directory/000/16/outputs/dataset_5a1ac870-b1e8-4437-8b57-211b71557c52.dat -e -b ./special_de_output/sample1/ -f 0.01 -m 200 -a 10 -j 1 -c 1 -g 50 -M 1.0
# StringTie version 2.2.2
test_chromosome	StringTie	transcript	53	550	1000	+	.	gene_id "CUFF.1"; transcript_id "CUFF.1.1"; cov "45.241611"; FPKM "3314403.750000"; TPM "1000000.000000";
test_chromosome	StringTie	exon	53	250	1000	+	.	gene_id "CUFF.1"; transcript_id "CUFF.1.1"; exon_number "1"; cov "49.237373";
test_chromosome	StringTie	exon	351	400	1000	+	.	gene_id "CUFF.1"; transcript_id "CUFF.1.1"; exon_number "2"; cov "53.000004";
test_chromosome	StringTie	exon	501	550	1000	+	.	gene_id "CUFF.1"; transcript_id "CUFF.1.1"; exon_number "3"; cov "21.660000";