Mercurial > repos > iuc > tb_profiler_profile

annotate test-data/example.vcf @ 0:1066ef03df53 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit a6f87bb33981b0fc0c9b7a9dd822259d9a29a3a1
author iuc
date Fri, 05 Sep 2025 12:50:26 +0000
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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1066ef03df53 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit a6f87bb33981b0fc0c9b7a9dd822259d9a29a3a1
iuc
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diff changeset
1 ##fileformat=VCFv4.0
1066ef03df53 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit a6f87bb33981b0fc0c9b7a9dd822259d9a29a3a1
iuc
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2 ##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data">
1066ef03df53 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit a6f87bb33981b0fc0c9b7a9dd822259d9a29a3a1
iuc
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3 ##INFO=<ID=AC,Number=.,Type=Integer,Description="Allele Count">
1066ef03df53 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit a6f87bb33981b0fc0c9b7a9dd822259d9a29a3a1
iuc
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4 ##INFO=<ID=AN,Number=1,Type=Integer,Description="Number of Alleles With Data">
1066ef03df53 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit a6f87bb33981b0fc0c9b7a9dd822259d9a29a3a1
iuc
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5 ##INFO=<ID=AF,Number=.,Type=Float,Description="Allele Frequency">
1066ef03df53 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit a6f87bb33981b0fc0c9b7a9dd822259d9a29a3a1
iuc
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6 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
1066ef03df53 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit a6f87bb33981b0fc0c9b7a9dd822259d9a29a3a1
iuc
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7 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT X1 X2 X3 X4 X5 X6
1066ef03df53 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit a6f87bb33981b0fc0c9b7a9dd822259d9a29a3a1
iuc
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8 1 10 1:10 A T 100 PASS NS=5;AC=0;AN=10;AF=0.000000 GT 0/0 ./. 0/0 0/0 0/0 0/0
1066ef03df53 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit a6f87bb33981b0fc0c9b7a9dd822259d9a29a3a1
iuc
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9 1 20 1:20 G C 100 PASS NS=0;AC=0;AN=0 GT ./. ./. ./. ./. ./. ./.
1066ef03df53 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit a6f87bb33981b0fc0c9b7a9dd822259d9a29a3a1
iuc
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10 1 30 1:30 C A 100 PASS NS=6;AC=0;AN=12;AF=0.000000 GT 0/0 0/0 0/0 0/0 0/0 0/0
1066ef03df53 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit a6f87bb33981b0fc0c9b7a9dd822259d9a29a3a1
iuc
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11 1 40 1:40 A C 100 PASS NS=6;AC=0;AN=12;AF=0.000000 GT 0/0 0/0 0/0 0/0 0/0 0/0
1066ef03df53 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit a6f87bb33981b0fc0c9b7a9dd822259d9a29a3a1
iuc
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12 1 10000 1:10000 G C 100 PASS NS=6;AC=0;AN=12;AF=0.000000 GT 0/0 0/0 0/0 0/0 0/0 0/0
1066ef03df53 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit a6f87bb33981b0fc0c9b7a9dd822259d9a29a3a1
iuc
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13 1 20000 1:20000 T A 100 PASS NS=6;AC=12;AN=12;AF=1.000000 GT 1/1 1/1 1/1 1/1 1/1 1/1
1066ef03df53 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit a6f87bb33981b0fc0c9b7a9dd822259d9a29a3a1
iuc
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14 4 5000 4:5000 A T 100 PASS NS=6;AC=12;AN=12;AF=1.000000 GT 1/1 1/1 1/1 1/1 1/1 1/1
1066ef03df53 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit a6f87bb33981b0fc0c9b7a9dd822259d9a29a3a1
iuc
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15 4 6000 4:6000 C T 100 PASS NS=6;AC=11;AN=12;AF=0.916667 GT 1/1 1/1 1/1 1/1 0/1 1/1
1066ef03df53 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit a6f87bb33981b0fc0c9b7a9dd822259d9a29a3a1
iuc
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16 X 800 X:800 A C 100 PASS NS=6;AC=12;AN=12;AF=1.000000 GT 1/1 1/1 1/1 1/1 1/1 1/1
1066ef03df53 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit a6f87bb33981b0fc0c9b7a9dd822259d9a29a3a1
iuc
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17 X 900 X:900 A T 100 PASS NS=6;AC=12;AN=12;AF=1.000000 GT 1/1 1/1 1/1 1/1 1/1 1/1
1066ef03df53 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit a6f87bb33981b0fc0c9b7a9dd822259d9a29a3a1
iuc
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18 X 1000 X:1000 T G 100 PASS NS=5;AC=10;AN=10;AF=1.000000 GT 1/1 1/1 1/1 1/1 1/1 ./.