Mercurial > repos > iuc > tbl2gff3

annotate tbl2gff3.xml @ 0:965674d88d34 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
author iuc
date Tue, 07 Jul 2020 04:20:40 -0400
parents
children 4a7f4b0cc0a3
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
1 <tool id="tbl2gff3" name="Table to GFF3" version="1.1">
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
2 <description></description>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
3 <macros>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
4 <import>macros.xml</import>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
5 </macros>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
6 <expand macro="requirements"/>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
7 <command detect_errors="exit_code">
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
8 <![CDATA[
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
9 python '$__tool_directory__/tbl2gff3.py'
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
10 '$table'
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
11 '$rid'
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
12 '$begin'
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
13 '$end'
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
14
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
15 #if $type:
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
16 --type '$type'
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
17 #end if
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
18
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
19 #if $score:
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
20 --score '$score'
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
21 #end if
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
22
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
23 #if $source:
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
24 --source '$source'
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
25 #end if
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
26
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
27 #if str($strand.strand_select) != "none":
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
28 --strand_${strand.strand_select} '${strand.strand}'
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
29 #end if
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
30
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
31 #for $a in $attributes
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
32 -a '${a.key}:${a.val}'
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
33 #end for
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
34
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
35 > '$output'
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
36 ]]></command>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
37 <inputs>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
38 <param label="Table" name="table" type="data" format="tabular"/>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
39
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
40 <param name="rid" type="text" value="1" label="Record ID column or value" optional="false" help="@HELP@"/>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
41 <param name="begin" type="text" value="" optional="false" label="Feature start column or value" help="@HELP@"/>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
42 <param name="end" type="text" value="" optional="false" label="Feature end column or value" help="@HELP@"/>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
43 <param name="type" type="text" value="sequence_feature" label="Feature type column or value" help="@HELP@"/>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
44 <param name="score" type="text" value="" label="Feature score column or value" help="@HELP@"/>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
45 <param name="source" type="text" value="tbl2gff3" label="Feature source column or value" help="@HELP@"/>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
46
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
47
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
48 <conditional name="strand">
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
49 <param name="strand_select" type="select" label="Strand">
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
50 <option value="none">Not specified</option>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
51 <option value="column">From Column</option>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
52 <option value="value">Specify Value</option>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
53 </param>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
54 <when value="none" />
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
55 <when value="column" >
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
56 <param name="strand" type="text" value="" label="Strand column" />
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
57 </when>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
58 <when value="value">
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
59 <param name="strand" type="integer" value="1" min="-1" max="1" label="Strand value" />
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
60 </when>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
61 </conditional>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
62
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
63 <repeat name="attributes" title="Qualifiers" help="Other columns can be turned into qualifiers with arbitrary keys and values">
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
64 <param name="key" type="text" value="key" label="Name of the qualifier"/>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
65 <param name="val" type="text" value="" label="Qualifier value column or raw text" help="@HELP@"/>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
66 </repeat>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
67
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
68 </inputs>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
69 <outputs>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
70 <data format="gff3" name="output"/>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
71 </outputs>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
72 <tests>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
73 <test>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
74 <param name="table" ftype="tabular" value="input.tab" />
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
75 <param name="rid" value="1" />
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
76 <param name="begin" value="5" />
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
77 <param name="end" value="6" />
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
78 <param name="score" value="14" />
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
79 <conditional name="strand">
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
80 <param name="strand_select" value="value"/>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
81 <param name="strand" value="1"/>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
82 </conditional>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
83 <repeat name="attributes">
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
84 <param name="key" value="e-value" />
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
85 <param name="val" value="7" />
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
86 </repeat>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
87 <repeat name="attributes">
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
88 <param name="key" value="hit" />
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
89 <param name="val" value="9" />
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
90 </repeat>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
91 <repeat name="attributes">
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
92 <param name="key" value="GI" />
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
93 <param name="val" value="11" />
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
94 </repeat>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
95 <repeat name="attributes">
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
96 <param name="key" value="test" />
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
97 <param name="val" value="one" />
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
98 </repeat>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
99 <repeat name="attributes">
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
100 <param name="key" value="test" />
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
101 <param name="val" value="two" />
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
102 </repeat>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
103
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
104 <output name="output" file="blast.gff3" />
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
105
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
106 </test>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
107 </tests>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
108 <help><![CDATA[
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
109 **What it does**
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
110
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
111 Convert a table into GFF3. This is not a very complex or advanced tool, it won't produce GFF with hierarchy, just flat gff3 which may be sufficient for visualisation purposes.
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
112
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
113 ]]></help>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
114 <citations>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
115 </citations>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
116 </tool>
965674d88d34 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tbl2gff3 commit 725ff8b6a4f01bf532052ce46400f529551a317d"
iuc
parents:
diff changeset
117