Mercurial > repos > iuc > tbprofiler

annotate test-data/example.vcf @ 3:19793eecc9f0 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit 5679ad1f1d5cac6c6168ad91dd4ca3616d22ca35"
author iuc
date Fri, 16 Aug 2019 16:26:31 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
3
19793eecc9f0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit 5679ad1f1d5cac6c6168ad91dd4ca3616d22ca35"
iuc
parents:
diff changeset
1 ##fileformat=VCFv4.0
19793eecc9f0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit 5679ad1f1d5cac6c6168ad91dd4ca3616d22ca35"
iuc
parents:
diff changeset
2 ##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data">
19793eecc9f0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit 5679ad1f1d5cac6c6168ad91dd4ca3616d22ca35"
iuc
parents:
diff changeset
3 ##INFO=<ID=AC,Number=.,Type=Integer,Description="Allele Count">
19793eecc9f0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit 5679ad1f1d5cac6c6168ad91dd4ca3616d22ca35"
iuc
parents:
diff changeset
4 ##INFO=<ID=AN,Number=1,Type=Integer,Description="Number of Alleles With Data">
19793eecc9f0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit 5679ad1f1d5cac6c6168ad91dd4ca3616d22ca35"
iuc
parents:
diff changeset
5 ##INFO=<ID=AF,Number=.,Type=Float,Description="Allele Frequency">
19793eecc9f0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit 5679ad1f1d5cac6c6168ad91dd4ca3616d22ca35"
iuc
parents:
diff changeset
6 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
19793eecc9f0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit 5679ad1f1d5cac6c6168ad91dd4ca3616d22ca35"
iuc
parents:
diff changeset
7 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT X1 X2 X3 X4 X5 X6
19793eecc9f0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit 5679ad1f1d5cac6c6168ad91dd4ca3616d22ca35"
iuc
parents:
diff changeset
8 1 10 1:10 A T 100 PASS NS=5;AC=0;AN=10;AF=0.000000 GT 0/0 ./. 0/0 0/0 0/0 0/0
19793eecc9f0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit 5679ad1f1d5cac6c6168ad91dd4ca3616d22ca35"
iuc
parents:
diff changeset
9 1 20 1:20 G C 100 PASS NS=0;AC=0;AN=0 GT ./. ./. ./. ./. ./. ./.
19793eecc9f0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit 5679ad1f1d5cac6c6168ad91dd4ca3616d22ca35"
iuc
parents:
diff changeset
10 1 30 1:30 C A 100 PASS NS=6;AC=0;AN=12;AF=0.000000 GT 0/0 0/0 0/0 0/0 0/0 0/0
19793eecc9f0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit 5679ad1f1d5cac6c6168ad91dd4ca3616d22ca35"
iuc
parents:
diff changeset
11 1 40 1:40 A C 100 PASS NS=6;AC=0;AN=12;AF=0.000000 GT 0/0 0/0 0/0 0/0 0/0 0/0
19793eecc9f0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit 5679ad1f1d5cac6c6168ad91dd4ca3616d22ca35"
iuc
parents:
diff changeset
12 1 10000 1:10000 G C 100 PASS NS=6;AC=0;AN=12;AF=0.000000 GT 0/0 0/0 0/0 0/0 0/0 0/0
19793eecc9f0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit 5679ad1f1d5cac6c6168ad91dd4ca3616d22ca35"
iuc
parents:
diff changeset
13 1 20000 1:20000 T A 100 PASS NS=6;AC=12;AN=12;AF=1.000000 GT 1/1 1/1 1/1 1/1 1/1 1/1
19793eecc9f0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit 5679ad1f1d5cac6c6168ad91dd4ca3616d22ca35"
iuc
parents:
diff changeset
14 4 5000 4:5000 A T 100 PASS NS=6;AC=12;AN=12;AF=1.000000 GT 1/1 1/1 1/1 1/1 1/1 1/1
19793eecc9f0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit 5679ad1f1d5cac6c6168ad91dd4ca3616d22ca35"
iuc
parents:
diff changeset
15 4 6000 4:6000 C T 100 PASS NS=6;AC=11;AN=12;AF=0.916667 GT 1/1 1/1 1/1 1/1 0/1 1/1
19793eecc9f0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit 5679ad1f1d5cac6c6168ad91dd4ca3616d22ca35"
iuc
parents:
diff changeset
16 X 800 X:800 A C 100 PASS NS=6;AC=12;AN=12;AF=1.000000 GT 1/1 1/1 1/1 1/1 1/1 1/1
19793eecc9f0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit 5679ad1f1d5cac6c6168ad91dd4ca3616d22ca35"
iuc
parents:
diff changeset
17 X 900 X:900 A T 100 PASS NS=6;AC=12;AN=12;AF=1.000000 GT 1/1 1/1 1/1 1/1 1/1 1/1
19793eecc9f0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit 5679ad1f1d5cac6c6168ad91dd4ca3616d22ca35"
iuc
parents:
diff changeset
18 X 1000 X:1000 T G 100 PASS NS=5;AC=10;AN=10;AF=1.000000 GT 1/1 1/1 1/1 1/1 1/1 ./.