Mercurial > repos > iuc > tbvcfreport

comparison test-data/rif_resistant_drug_resistance_report.html @ 3:42818629ec4c draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit f54e7cfd572498517dde7fe6afab47a20e3fcb17
author iuc
date Fri, 31 May 2024 20:06:49 +0000
parents 4934c0ac6197
children
comparison
equal deleted inserted replaced
2:4934c0ac6197 3:42818629ec4c
19 <div class="row"> 19 <div class="row">
20 <h2 class="mt-5"> 20 <h2 class="mt-5">
21 rif_resistant Report 21 rif_resistant Report
22 </h2> 22 </h2>
23 </div> 23 </div>
24 <div class="row">
25 <table class="table table-striped table-hover table-responsive-md">
26 <caption>Lineage Info</caption>
27 <thead class="thead-light">
28 <tr>
29 <th scope="col">Lineage</th>
30 <th scope="col">Lineage support fraction</th>
31 <th scope="col">Family</th>
32 <th scope="col">RD</th>
33 </tr>
34 </thead>
35 <tbody>
36 <tr>
37 <td>lineage2</td>
38 <td>0.9940119760479041</td>
39 <td>East-Asian</td>
40 <td>RD105</td>
41 </tr>
42 <tr>
43 <td>lineage2.2.2</td>
44 <td>1.0</td>
45 <td>East-Asian (Beijing)</td>
46 <td>RD105;RD207</td>
47 </tr>
48 </tbody>
49 </table>
50 </div>
24 <hr> 51 <hr>
25 <div class="row"> 52 <div class="row">
26 <h3 class="mb-2"> 53 <h3 class="mb-2">
27 <a class="text-body" href="https://github.com/jodyphelan/TBProfiler" target="_blank" 54 <a class="text-body" href="https://github.com/jodyphelan/TBProfiler" target="_blank"
28 rel="noreferrer noopener">TBProfiler</a> 55 rel="noreferrer noopener">TB-Profiler</a>
29 Drug Resistance Report 56 Drug Resistance Report
30 </h3> 57 </h3>
31 </div> 58 </div>
32 <div class="row"> 59 <div class="row">
33 <table id="drug_resistance" class="table table-hover table-bordered table-striped table-sm" cellspacing="0"> 60 <div class="col-md-12">
34 <caption class="mb-3 text-info"> 61 <p>TB-Profiler version 6.2.1 with
35 <strong>Disclaimer</strong>: 62 database tbdb:82777ea (Sun Mar 17 01:14:00 2024 +0000)</p>
36 Drug resistance predictions are for <strong>Research Purposes Only</strong> and are produced by 63 </div>
37 <a class="text-info" href="https://github.com/jodyphelan/TBProfiler" target="_blank" 64 <div class="row">
38 rel="noreferrer noopener">TBProfiler</a>. 65 <div class="col-md-12">
39 </caption> 66 <table id="drug_resistance" class="table table-hover table-bordered table-striped table-responsive-md" cellspacing="0">
40 <thead class="thead-light"> 67 <caption class="mb-3 text-info">
41 <tr> 68 <strong>Disclaimer</strong>:
42 <th scope="col">Drug</th> 69 Drug resistance predictions are for <strong>Research Purposes Only</strong> and are produced by
43 <th scope="col">Resistance</th> 70 <a class="text-info" href="https://github.com/jodyphelan/TBProfiler" target="_blank"
44 <th scope="col">Supporting Mutations</th> 71 rel="noreferrer noopener">TB-Profiler</a>.
45 </tr> 72 </caption>
46 </thead> 73 <thead class="thead-light">
47 <tr> 74 <tr>
48 <td>Isoniazid</td> 75 <th scope="col">Drug</th>
49 <td>S</td> 76 <th scope="col">Resistance</th>
50 <td></td> 77 <th scope="col">Supporting Mutations</th>
51 </tr> 78 </tr>
52 <tr> 79 </thead>
53 <td>Rifampicin</td> 80 <tr>
54 <td>R</td> 81 <td>Isoniazid</td>
55 <td> <a target="_blank" href="https://explorer.sanbi.ac.za/gene?q=rpoB" 82 <td>S</td>
56 rel="noreferrer noopener">rpoB</a> 83 <td></td>
57 (1.0 p.Asp435Val) 84 </tr>
58 </td> 85 <tr>
59 </tr> 86 <td>Rifampicin</td>
60 <tr> 87 <td>R</td>
61 <td>Ethambutol</td> 88 <td> <a target="_blank" href="https://explorer.sanbi.ac.za/gene?q=rpoB"
62 <td>S</td> 89 rel="noreferrer noopener">rpoB</a>
63 <td></td> 90 (1.0 p.Asp435Val)
64 </tr> 91 </td>
65 <tr> 92 </tr>
66 <td>Pyrazinamide</td> 93 <tr>
67 <td>S</td> 94 <td>Ethambutol</td>
68 <td></td> 95 <td>S</td>
69 </tr> 96 <td></td>
70 <tr> 97 </tr>
71 <td>Streptomycin</td> 98 <tr>
72 <td>S</td> 99 <td>Pyrazinamide</td>
73 <td></td> 100 <td>S</td>
74 </tr> 101 <td></td>
75 <tr> 102 </tr>
76 <td>Ethionamide</td> 103 <tr>
77 <td>S</td> 104 <td>Streptomycin</td>
78 <td></td> 105 <td>S</td>
79 </tr> 106 <td></td>
80 <tr> 107 </tr>
81 <td>Fluoroquinolones</td> 108 <tr>
82 <td>S</td> 109 <td>Ethionamide</td>
83 <td></td> 110 <td>S</td>
84 </tr> 111 <td></td>
85 <tr> 112 </tr>
86 <td>Amikacin</td> 113 <tr>
87 <td>S</td> 114 <td>Fluoroquinolones</td>
88 <td></td> 115 <td>S</td>
89 </tr> 116 <td></td>
90 <tr> 117 </tr>
91 <td>Capreomycin</td> 118 <tr>
92 <td>S</td> 119 <td>Amikacin</td>
93 <td></td> 120 <td>S</td>
94 </tr> 121 <td></td>
95 <tr> 122 </tr>
96 <td>Kanamycin</td> 123 <tr>
97 <td>S</td> 124 <td>Capreomycin</td>
98 <td></td> 125 <td>S</td>
99 </tr> 126 <td></td>
100 <tr> 127 </tr>
101 <td>Para-aminosalicylic acid</td> 128 <tr>
102 <td>S</td> 129 <td>Kanamycin</td>
103 <td></td> 130 <td>S</td>
104 </tr> 131 <td></td>
105 <tr> 132 </tr>
106 <td>Linezolid</td> 133 <tr>
107 <td>S</td> 134 <td>Para-aminosalicylic acid</td>
108 <td></td> 135 <td>S</td>
109 </tr> 136 <td></td>
110 <tr> 137 </tr>
111 <td>Cycloserine</td> 138 <tr>
112 <td>S</td> 139 <td>Linezolid</td>
113 <td></td> 140 <td>S</td>
114 </tr> 141 <td></td>
115 <tr> 142 </tr>
116 <td>Delaminid</td> 143 <tr>
117 <td>S</td> 144 <td>Cycloserine</td>
118 <td></td> 145 <td>S</td>
119 </tr> 146 <td></td>
120 <tr> 147 </tr>
121 <td>Clofazimine</td> 148 <tr>
122 <td>S</td> 149 <td>Delamanid</td>
123 <td></td> 150 <td>S</td>
124 </tr> 151 <td></td>
125 <tr> 152 </tr>
126 <td>Bedaquiline</td> 153 <tr>
127 <td>S</td> 154 <td>Clofazimine</td>
128 <td></td> 155 <td>S</td>
129 </tr> 156 <td></td>
130 </tr> 157 </tr>
131 <tr> 158 <tr>
132 <td>Aminoglycosides</td> 159 <td>Bedaquiline</td>
133 <td>S</td> 160 <td>S</td>
134 <td></td> 161 <td></td>
135 </tr> 162 </tr>
136 163 <tr>
137 </table> 164 <td>Aminoglycosides</td>
165 <td>S</td>
166 <td></td>
167 </tr>
168 <tr>
169 <td>Levofloxacin</td>
170 <td>S</td>
171 <td></td>
172 </tr>
173 <tr>
174 <td>Moxifloxacin</td>
175 <td>S</td>
176 <td></td>
177 </tr>
178 <tr>
179 <td>Pretomanid</td>
180 <td>S</td>
181 <td></td>
182 </tr>
183 </table>
184 </div>
138 </div> 185 </div>
139 <script src="https://code.jquery.com/jquery-3.3.1.slim.min.js" 186 <script src="https://code.jquery.com/jquery-3.3.1.slim.min.js"
140 integrity="sha384-q8i/X+965DzO0rT7abK41JStQIAqVgRVzpbzo5smXKp4YfRvH+8abtTE1Pi6jizo" crossorigin="anonymous"> 187 integrity="sha384-q8i/X+965DzO0rT7abK41JStQIAqVgRVzpbzo5smXKp4YfRvH+8abtTE1Pi6jizo" crossorigin="anonymous">
141 </script> 188 </script>
142 <script src="https://cdnjs.cloudflare.com/ajax/libs/popper.js/1.14.3/umd/popper.min.js" 189 <script src="https://cdnjs.cloudflare.com/ajax/libs/popper.js/1.14.3/umd/popper.min.js"