Mercurial > repos > iuc > tbvcfreport
diff test-data/rif_resistant_drug_resistance_report.html @ 3:42818629ec4c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit f54e7cfd572498517dde7fe6afab47a20e3fcb17
| author | iuc |
|---|---|
| date | Fri, 31 May 2024 20:06:49 +0000 |
| parents | 4934c0ac6197 |
| children |
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--- a/test-data/rif_resistant_drug_resistance_report.html Thu Mar 17 07:33:00 2022 +0000 +++ b/test-data/rif_resistant_drug_resistance_report.html Fri May 31 20:06:49 2024 +0000 @@ -21,120 +21,167 @@ rif_resistant Report </h2> </div> + <div class="row"> + <table class="table table-striped table-hover table-responsive-md"> + <caption>Lineage Info</caption> + <thead class="thead-light"> + <tr> + <th scope="col">Lineage</th> + <th scope="col">Lineage support fraction</th> + <th scope="col">Family</th> + <th scope="col">RD</th> + </tr> + </thead> + <tbody> + <tr> + <td>lineage2</td> + <td>0.9940119760479041</td> + <td>East-Asian</td> + <td>RD105</td> + </tr> + <tr> + <td>lineage2.2.2</td> + <td>1.0</td> + <td>East-Asian (Beijing)</td> + <td>RD105;RD207</td> + </tr> + </tbody> + </table> + </div> <hr> <div class="row"> <h3 class="mb-2"> <a class="text-body" href="https://github.com/jodyphelan/TBProfiler" target="_blank" - rel="noreferrer noopener">TBProfiler</a> + rel="noreferrer noopener">TB-Profiler</a> Drug Resistance Report </h3> </div> <div class="row"> - <table id="drug_resistance" class="table table-hover table-bordered table-striped table-sm" cellspacing="0"> - <caption class="mb-3 text-info"> - <strong>Disclaimer</strong>: - Drug resistance predictions are for <strong>Research Purposes Only</strong> and are produced by - <a class="text-info" href="https://github.com/jodyphelan/TBProfiler" target="_blank" - rel="noreferrer noopener">TBProfiler</a>. - </caption> - <thead class="thead-light"> - <tr> - <th scope="col">Drug</th> - <th scope="col">Resistance</th> - <th scope="col">Supporting Mutations</th> - </tr> - </thead> - <tr> - <td>Isoniazid</td> - <td>S</td> - <td></td> - </tr> - <tr> - <td>Rifampicin</td> - <td>R</td> - <td> <a target="_blank" href="https://explorer.sanbi.ac.za/gene?q=rpoB" - rel="noreferrer noopener">rpoB</a> - (1.0 p.Asp435Val) - </td> - </tr> - <tr> - <td>Ethambutol</td> - <td>S</td> - <td></td> - </tr> - <tr> - <td>Pyrazinamide</td> - <td>S</td> - <td></td> - </tr> - <tr> - <td>Streptomycin</td> - <td>S</td> - <td></td> - </tr> - <tr> - <td>Ethionamide</td> - <td>S</td> - <td></td> - </tr> - <tr> - <td>Fluoroquinolones</td> - <td>S</td> - <td></td> - </tr> + <div class="col-md-12"> + <p>TB-Profiler version 6.2.1 with + database tbdb:82777ea (Sun Mar 17 01:14:00 2024 +0000)</p> +</div> +<div class="row"> + <div class="col-md-12"> + <table id="drug_resistance" class="table table-hover table-bordered table-striped table-responsive-md" cellspacing="0"> + <caption class="mb-3 text-info"> + <strong>Disclaimer</strong>: + Drug resistance predictions are for <strong>Research Purposes Only</strong> and are produced by + <a class="text-info" href="https://github.com/jodyphelan/TBProfiler" target="_blank" + rel="noreferrer noopener">TB-Profiler</a>. + </caption> + <thead class="thead-light"> <tr> - <td>Amikacin</td> - <td>S</td> - <td></td> - </tr> - <tr> - <td>Capreomycin</td> - <td>S</td> - <td></td> - </tr> - <tr> - <td>Kanamycin</td> - <td>S</td> - <td></td> - </tr> - <tr> - <td>Para-aminosalicylic acid</td> - <td>S</td> - <td></td> - </tr> - <tr> - <td>Linezolid</td> - <td>S</td> - <td></td> - </tr> - <tr> - <td>Cycloserine</td> - <td>S</td> - <td></td> - </tr> - <tr> - <td>Delaminid</td> - <td>S</td> - <td></td> - </tr> - <tr> - <td>Clofazimine</td> - <td>S</td> - <td></td> - </tr> - <tr> - <td>Bedaquiline</td> - <td>S</td> - <td></td> - </tr> - </tr> - <tr> - <td>Aminoglycosides</td> - <td>S</td> - <td></td> - </tr> - - </table> + <th scope="col">Drug</th> + <th scope="col">Resistance</th> + <th scope="col">Supporting Mutations</th> + </tr> + </thead> + <tr> + <td>Isoniazid</td> + <td>S</td> + <td></td> + </tr> + <tr> + <td>Rifampicin</td> + <td>R</td> + <td> <a target="_blank" href="https://explorer.sanbi.ac.za/gene?q=rpoB" + rel="noreferrer noopener">rpoB</a> + (1.0 p.Asp435Val) + </td> + </tr> + <tr> + <td>Ethambutol</td> + <td>S</td> + <td></td> + </tr> + <tr> + <td>Pyrazinamide</td> + <td>S</td> + <td></td> + </tr> + <tr> + <td>Streptomycin</td> + <td>S</td> + <td></td> + </tr> + <tr> + <td>Ethionamide</td> + <td>S</td> + <td></td> + </tr> + <tr> + <td>Fluoroquinolones</td> + <td>S</td> + <td></td> + </tr> + <tr> + <td>Amikacin</td> + <td>S</td> + <td></td> + </tr> + <tr> + <td>Capreomycin</td> + <td>S</td> + <td></td> + </tr> + <tr> + <td>Kanamycin</td> + <td>S</td> + <td></td> + </tr> + <tr> + <td>Para-aminosalicylic acid</td> + <td>S</td> + <td></td> + </tr> + <tr> + <td>Linezolid</td> + <td>S</td> + <td></td> + </tr> + <tr> + <td>Cycloserine</td> + <td>S</td> + <td></td> + </tr> + <tr> + <td>Delamanid</td> + <td>S</td> + <td></td> + </tr> + <tr> + <td>Clofazimine</td> + <td>S</td> + <td></td> + </tr> + <tr> + <td>Bedaquiline</td> + <td>S</td> + <td></td> + </tr> + <tr> + <td>Aminoglycosides</td> + <td>S</td> + <td></td> + </tr> + <tr> + <td>Levofloxacin</td> + <td>S</td> + <td></td> + </tr> + <tr> + <td>Moxifloxacin</td> + <td>S</td> + <td></td> + </tr> + <tr> + <td>Pretomanid</td> + <td>S</td> + <td></td> + </tr> + </table> + </div> </div> <script src="https://code.jquery.com/jquery-3.3.1.slim.min.js" integrity="sha384-q8i/X+965DzO0rT7abK41JStQIAqVgRVzpbzo5smXKp4YfRvH+8abtTE1Pi6jizo" crossorigin="anonymous">