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view test-data/rif_resistant_variants_report_with_lineage.txt @ 4:9793bc5d741b draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit a8fe4cf3a77ffb0334533cccb57b7af5f7f89e3b
| author | iuc |
|---|---|
| date | Fri, 07 Jun 2024 14:29:45 +0000 |
| parents | 42818629ec4c |
| children |
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#Rif_resistant Report #Lineage Support Family RD lineage2 0.9940119760479041 East-Asian RD105 lineage2.2.2 1.0 East-Asian (Beijing) RD105;RD207 #CHR GENE IDENTIFIER PRODUCT IS_SNV ANNOTATION POS REF ALT CONSEQUENCE IMPACT PATHWAY Chromosome Rv0014c GENE_Rv0014c NOPROTEIN True synonymous_variant 15890 G A p.Ser527Ser LOW Chromosome Rv0127 GENE_Rv0127 NOPROTEIN True synonymous_variant 154990 G T p.Arg253Arg LOW Chromosome Rv0284 GENE_Rv0284 NOPROTEIN True synonymous_variant 346693 G T p.Ser353Ser LOW Chromosome Rv0372c GENE_Rv0372c NOPROTEIN True synonymous_variant 449194 G A p.Gly64Gly LOW Chromosome Rv0411c GENE_Rv0411c NOPROTEIN True synonymous_variant 497491 G A p.Asp270Asp LOW Chromosome Rv0667 GENE_Rv0667 NOPROTEIN True missense_variant 761110 A T p.Asp435Val MODERATE Chromosome Rv0715 GENE_Rv0715 NOPROTEIN True synonymous_variant 811753 C T p.His4His LOW Chromosome Rv1391 GENE_Rv1391 NOPROTEIN True synonymous_variant 1565566 C T p.Pro42Pro LOW Chromosome Rv1630 GENE_Rv1630 NOPROTEIN True synonymous_variant 1834177 A C p.Arg212Arg LOW Chromosome Rv1640c GENE_Rv1640c NOPROTEIN True synonymous_variant 1849051 C T p.Pro995Pro LOW Chromosome Rv2231c GENE_Rv2231c NOPROTEIN True synonymous_variant 2505085 G A p.Ala205Ala LOW Chromosome Rv2268c GENE_Rv2268c NOPROTEIN True synonymous_variant 2543395 T C p.Glu294Glu LOW Chromosome Rv2357c GENE_Rv2357c NOPROTEIN True synonymous_variant 2640807 G A p.Val86Val LOW Chromosome Rv2472 GENE_Rv2472 NOPROTEIN True synonymous_variant 2775361 C T p.Arg30Arg LOW Chromosome Rv2483c GENE_Rv2483c NOPROTEIN True synonymous_variant 2789798 G T p.Arg409Arg LOW Chromosome Rv3109 GENE_Rv3109 NOPROTEIN True synonymous_variant 3477942 A G p.Thr98Thr LOW Chromosome Rv3210c GENE_Rv3210c NOPROTEIN True synonymous_variant 3587446 G A p.Leu32Leu LOW Chromosome Rv3799c GENE_Rv3799c NOPROTEIN True synonymous_variant 4254431 G A p.Asp506Asp LOW Chromosome Rv3799c GENE_Rv3799c NOPROTEIN True missense_variant 4254477 T C p.His491Arg MODERATE