telescope_assign: test-data/telescope-in1.gtf annotate

annotate test-data/telescope-in1.gtf @ 0:66ff74923224 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463"

author	iuc
date	Tue, 03 Sep 2019 18:12:09 -0400
parents
children

rev	line source
0 66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	1 ### HML2_1p36.21a ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	2 chr1 rmsk gene 12780115 12785935 . - . gene_id "HML2_1p36.21a"; transcript_id "HML2_1p36.21a"; locus "HML2_1p36.21a"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0001"; model_cov "4813"; model_pct "63.9";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	3 chr1 rmsk exon 12780115 12784947 27645 - . gene_id "HML2_1p36.21a"; transcript_id "HML2_1p36.21a"; locus "HML2_1p36.21a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0001"; repClass "LTR"; repEnd "4816"; repFamily "ERVK"; repLeft "3"; repStart "-2720";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	4 chr1 rmsk exon 12784950 12785935 7601 - . gene_id "HML2_1p36.21a"; transcript_id "HML2_1p36.21a"; locus "HML2_1p36.21a"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0001"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	5 ### HML2_1p36.21b ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	6 chr1 rmsk gene 13012447 13021988 . - . gene_id "HML2_1p36.21b"; transcript_id "HML2_1p36.21b"; locus "HML2_1p36.21b"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0002"; model_cov "7448"; model_pct "98.8";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	7 chr1 rmsk exon 13012447 13013444 8041 - . gene_id "HML2_1p36.21b"; transcript_id "HML2_1p36.21b"; locus "HML2_1p36.21b"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0002"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	8 chr1 rmsk exon 13013534 13020171 21384 - . gene_id "HML2_1p36.21b"; transcript_id "HML2_1p36.21b"; locus "HML2_1p36.21b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0002"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "743"; repStart "-89";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	9 chr1 rmsk exon 13020264 13020996 4529 - . gene_id "HML2_1p36.21b"; transcript_id "HML2_1p36.21b"; locus "HML2_1p36.21b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0002"; repClass "LTR"; repEnd "746"; repFamily "ERVK"; repLeft "2"; repStart "-6790";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	10 chr1 rmsk exon 13020998 13021988 7851 - . gene_id "HML2_1p36.21b"; transcript_id "HML2_1p36.21b"; locus "HML2_1p36.21b"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0002"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	11 ### HML2_1p36.21c ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	12 chr1 rmsk gene 13206972 13216513 . + . gene_id "HML2_1p36.21c"; transcript_id "HML2_1p36.21c"; locus "HML2_1p36.21c"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0003"; model_cov "7448"; model_pct "98.8";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	13 chr1 rmsk exon 13206972 13207962 7851 + . gene_id "HML2_1p36.21c"; transcript_id "HML2_1p36.21c"; locus "HML2_1p36.21c"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0003"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	14 chr1 rmsk exon 13207964 13208696 4529 + . gene_id "HML2_1p36.21c"; transcript_id "HML2_1p36.21c"; locus "HML2_1p36.21c"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0003"; repClass "LTR"; repEnd "746"; repFamily "ERVK"; repLeft "-6790"; repStart "2";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	15 chr1 rmsk exon 13208789 13215426 21447 + . gene_id "HML2_1p36.21c"; transcript_id "HML2_1p36.21c"; locus "HML2_1p36.21c"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0003"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "-89"; repStart "743";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	16 chr1 rmsk exon 13215516 13216513 7965 + . gene_id "HML2_1p36.21c"; transcript_id "HML2_1p36.21c"; locus "HML2_1p36.21c"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0003"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	17 ### HML2_1p36.21d ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	18 chr1 rmsk gene 13352736 13362257 . + . gene_id "HML2_1p36.21d"; transcript_id "HML2_1p36.21d"; locus "HML2_1p36.21d"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0004"; model_cov "7449"; model_pct "98.8";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	19 chr1 rmsk exon 13352736 13353726 7746 + . gene_id "HML2_1p36.21d"; transcript_id "HML2_1p36.21d"; locus "HML2_1p36.21d"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0004"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	20 chr1 rmsk exon 13353727 13354460 4505 + . gene_id "HML2_1p36.21d"; transcript_id "HML2_1p36.21d"; locus "HML2_1p36.21d"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0004"; repClass "LTR"; repEnd "746"; repFamily "ERVK"; repLeft "-6790"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	21 chr1 rmsk exon 13354553 13361170 21857 + . gene_id "HML2_1p36.21d"; transcript_id "HML2_1p36.21d"; locus "HML2_1p36.21d"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0004"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "-89"; repStart "743";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	22 chr1 rmsk exon 13361260 13362257 8099 + . gene_id "HML2_1p36.21d"; transcript_id "HML2_1p36.21d"; locus "HML2_1p36.21d"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0004"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	23 ### HML2_1p34.3 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	24 chr1 rmsk gene 36488984 36491127 . - . gene_id "HML2_1p34.3"; transcript_id "HML2_1p34.3"; locus "HML2_1p34.3"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0006"; model_cov "1096"; model_pct "14.5";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	25 chr1 rmsk exon 36488984 36489934 5851 - . gene_id "HML2_1p34.3"; transcript_id "HML2_1p34.3"; locus "HML2_1p34.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0006"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	26 chr1 rmsk exon 36490048 36490378 2634 - . gene_id "HML2_1p34.3"; transcript_id "HML2_1p34.3"; locus "HML2_1p34.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0006"; repClass "LTR"; repEnd "7417"; repFamily "ERVK"; repLeft "7087"; repStart "-119";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	27 chr1 rmsk exon 36490359 36491127 5815 - . gene_id "HML2_1p34.3"; transcript_id "HML2_1p34.3"; locus "HML2_1p34.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0006"; repClass "LTR"; repEnd "5868"; repFamily "ERVK"; repLeft "5102"; repStart "-1668";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	28 ### HML2_1p31.1 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	29 chr1 rmsk gene 75377086 75383458 . + . gene_id "HML2_1p31.1"; transcript_id "HML2_1p31.1"; locus "HML2_1p31.1"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0007"; model_cov "4355"; model_pct "57.8";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	30 chr1 rmsk exon 75377086 75378053 8811 + . gene_id "HML2_1p31.1"; transcript_id "HML2_1p31.1"; locus "HML2_1p31.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0007"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	31 chr1 rmsk exon 75378054 75380597 22845 + . gene_id "HML2_1p31.1"; transcript_id "HML2_1p31.1"; locus "HML2_1p31.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0007"; repClass "LTR"; repEnd "2543"; repFamily "ERVK"; repLeft "-4993"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	32 chr1 rmsk exon 75380582 75380780 1643 + . gene_id "HML2_1p31.1"; transcript_id "HML2_1p31.1"; locus "HML2_1p31.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0007"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "-2002"; repStart "5336";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	33 chr1 rmsk exon 75380780 75382395 14607 + . gene_id "HML2_1p31.1"; transcript_id "HML2_1p31.1"; locus "HML2_1p31.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0007"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "-95"; repStart "5826";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	34 chr1 rmsk exon 75382491 75383458 8811 + . gene_id "HML2_1p31.1"; transcript_id "HML2_1p31.1"; locus "HML2_1p31.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0007"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	35 ### HML2_1q21.3 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	36 chr1 rmsk gene 150632886 150634662 . - . gene_id "HML2_1q21.3"; transcript_id "HML2_1q21.3"; locus "HML2_1q21.3"; category "internal"; intModel "HERVK-int"; locid "HERVK-int_0009"; model_cov "1783"; model_pct "23.7";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	37 chr1 rmsk exon 150632886 150634662 15187 - . gene_id "HML2_1q21.3"; transcript_id "HML2_1q21.3"; locus "HML2_1q21.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0009"; repClass "LTR"; repEnd "5563"; repFamily "ERVK"; repLeft "3780"; repStart "-1973";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	38 ### HML2_1q22 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	39 chr1 rmsk gene 155626666 155635845 . - . gene_id "HML2_1q22"; transcript_id "HML2_1q22"; locus "HML2_1q22"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0011"; model_cov "7148"; model_pct "94.9";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	40 chr1 rmsk exon 155626666 155627633 8978 - . gene_id "HML2_1q22"; transcript_id "HML2_1q22"; locus "HML2_1q22"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0011"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	41 chr1 rmsk exon 155627729 155629344 14971 - . gene_id "HML2_1q22"; transcript_id "HML2_1q22"; locus "HML2_1q22"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0011"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "5826"; repStart "-95";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	42 chr1 rmsk exon 155629344 155634877 50700 - . gene_id "HML2_1q22"; transcript_id "HML2_1q22"; locus "HML2_1q22"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0011"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "1"; repStart "-2002";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	43 chr1 rmsk exon 155634878 155635845 8978 - . gene_id "HML2_1q22"; transcript_id "HML2_1q22"; locus "HML2_1q22"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0011"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	44 ### HML2_1q23.3 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	45 chr1 rmsk gene 160690785 160700016 . + . gene_id "HML2_1q23.3"; transcript_id "HML2_1q23.3"; locus "HML2_1q23.3"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0012"; model_cov "7209"; model_pct "95.7";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	46 chr1 rmsk exon 160690785 160691753 8986 + . gene_id "HML2_1q23.3"; transcript_id "HML2_1q23.3"; locus "HML2_1q23.3"; repName "LTR5"; geneRegion "ltr"; locid "HERVK-int_0012"; repClass "LTR"; repEnd "969"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	47 chr1 rmsk exon 160691754 160697338 32110 + . gene_id "HML2_1q23.3"; transcript_id "HML2_1q23.3"; locus "HML2_1q23.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0012"; repClass "LTR"; repEnd "5178"; repFamily "ERVK"; repLeft "-2358"; repStart "-416";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	48 chr1 rmsk exon 160697338 160698953 14352 + . gene_id "HML2_1q23.3"; transcript_id "HML2_1q23.3"; locus "HML2_1q23.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0012"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "-95"; repStart "5826";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	49 chr1 rmsk exon 160699048 160700016 8448 + . gene_id "HML2_1q23.3"; transcript_id "HML2_1q23.3"; locus "HML2_1q23.3"; repName "LTR5"; geneRegion "ltr"; locid "HERVK-int_0012"; repClass "LTR"; repEnd "969"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	50 ### HML2_1q24.1 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	51 chr1 rmsk gene 166605366 166611021 . - . gene_id "HML2_1q24.1"; transcript_id "HML2_1q24.1"; locus "HML2_1q24.1"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0013"; model_cov "3660"; model_pct "48.6";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	52 chr1 rmsk exon 166605366 166606355 7845 - . gene_id "HML2_1q24.1"; transcript_id "HML2_1q24.1"; locus "HML2_1q24.1"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0013"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	53 chr1 rmsk exon 166606445 166609934 20727 - . gene_id "HML2_1q24.1"; transcript_id "HML2_1q24.1"; locus "HML2_1q24.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0013"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "3882"; repStart "-89";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	54 chr1 rmsk exon 166609929 166610025 470 - . gene_id "HML2_1q24.1"; transcript_id "HML2_1q24.1"; locus "HML2_1q24.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0013"; repClass "LTR"; repEnd "102"; repFamily "ERVK"; repLeft "7"; repStart "-7434";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	55 chr1 rmsk exon 166610032 166611021 7616 - . gene_id "HML2_1q24.1"; transcript_id "HML2_1q24.1"; locus "HML2_1q24.1"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0013"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	56 ### HML2_1q32.2 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	57 chr1 rmsk gene 207635112 207639291 . - . gene_id "HML2_1q32.2"; transcript_id "HML2_1q32.2"; locus "HML2_1q32.2"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0014"; model_cov "3184"; model_pct "42.3";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	58 chr1 rmsk exon 207635112 207636074 7708 - . gene_id "HML2_1q32.2"; transcript_id "HML2_1q32.2"; locus "HML2_1q32.2"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0014"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	59 chr1 rmsk exon 207636165 207637777 13912 - . gene_id "HML2_1q32.2"; transcript_id "HML2_1q32.2"; locus "HML2_1q32.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0014"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "5826"; repStart "-95";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	60 chr1 rmsk exon 207637777 207638358 4802 - . gene_id "HML2_1q32.2"; transcript_id "HML2_1q32.2"; locus "HML2_1q32.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0014"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "4952"; repStart "-2002";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	61 chr1 rmsk exon 207638337 207639291 7029 - . gene_id "HML2_1q32.2"; transcript_id "HML2_1q32.2"; locus "HML2_1q32.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0014"; repClass "LTR"; repEnd "2716"; repFamily "ERVK"; repLeft "1729"; repStart "-4820";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	62 ### HML2_1q43 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	63 chr1 rmsk gene 238762295 238764473 . - . gene_id "HML2_1q43"; transcript_id "HML2_1q43"; locus "HML2_1q43"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0015"; model_cov "1101"; model_pct "14.6";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	64 chr1 rmsk exon 238762295 238763288 7387 - . gene_id "HML2_1q43"; transcript_id "HML2_1q43"; locus "HML2_1q43"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0015"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	65 chr1 rmsk exon 238763378 238764473 7000 - . gene_id "HML2_1q43"; transcript_id "HML2_1q43"; locus "HML2_1q43"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0015"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "6346"; repStart "-89";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	66 ### HML2_2q21.1 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	67 chr2 rmsk gene 129961965 129965044 . - . gene_id "HML2_2q21.1"; transcript_id "HML2_2q21.1"; locus "HML2_2q21.1"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0016"; model_cov "2023"; model_pct "26.8";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	68 chr2 rmsk exon 129961965 129962925 8380 - . gene_id "HML2_2q21.1"; transcript_id "HML2_2q21.1"; locus "HML2_2q21.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0016"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	69 chr2 rmsk exon 129963021 129964636 14541 - . gene_id "HML2_2q21.1"; transcript_id "HML2_2q21.1"; locus "HML2_2q21.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0016"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "5826"; repStart "-95";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	70 chr2 rmsk exon 129964636 129965044 3589 - . gene_id "HML2_2q21.1"; transcript_id "HML2_2q21.1"; locus "HML2_2q21.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0016"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "5126"; repStart "-2002";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	71 ### HML2_3p25.3 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	72 chr3 rmsk gene 9847662 9854552 . - . gene_id "HML2_3p25.3"; transcript_id "HML2_3p25.3"; locus "HML2_3p25.3"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0020"; model_cov "4918"; model_pct "65.3";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	73 chr3 rmsk exon 9847662 9848644 7459 - . gene_id "HML2_3p25.3"; transcript_id "HML2_3p25.3"; locus "HML2_3p25.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0020"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	74 chr3 rmsk exon 9848734 9850354 13139 - . gene_id "HML2_3p25.3"; transcript_id "HML2_3p25.3"; locus "HML2_3p25.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0020"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "5826"; repStart "-89";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	75 chr3 rmsk exon 9850354 9850938 4633 - . gene_id "HML2_3p25.3"; transcript_id "HML2_3p25.3"; locus "HML2_3p25.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0020"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "4952"; repStart "-2002";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	76 chr3 rmsk exon 9850917 9853634 21518 - . gene_id "HML2_3p25.3"; transcript_id "HML2_3p25.3"; locus "HML2_3p25.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0020"; repClass "LTR"; repEnd "2716"; repFamily "ERVK"; repLeft "1"; repStart "-4820";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	77 chr3 rmsk exon 9853635 9854552 6737 - . gene_id "HML2_3p25.3"; transcript_id "HML2_3p25.3"; locus "HML2_3p25.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0020"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	78 ### HML2_3p12.3 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	79 chr3 rmsk gene 75551314 75559999 . + . gene_id "HML2_3p12.3"; transcript_id "HML2_3p12.3"; locus "HML2_3p12.3"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0022"; model_cov "7535"; model_pct "100.0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	80 chr3 rmsk exon 75551314 75551382 580 + . gene_id "HML2_3p12.3"; transcript_id "HML2_3p12.3"; locus "HML2_3p12.3"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0022"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "0"; repStart "965";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	81 chr3 rmsk exon 75551383 75558968 37160 + . gene_id "HML2_3p12.3"; transcript_id "HML2_3p12.3"; locus "HML2_3p12.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0022"; repClass "LTR"; repEnd "7536"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	82 chr3 rmsk exon 75558969 75559999 8382 + . gene_id "HML2_3p12.3"; transcript_id "HML2_3p12.3"; locus "HML2_3p12.3"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0022"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	83 ### HML2_3q12.3 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	84 chr3 rmsk gene 101691893 101701015 . + . gene_id "HML2_3q12.3"; transcript_id "HML2_3q12.3"; locus "HML2_3q12.3"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0023"; model_cov "7148"; model_pct "94.9";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	85 chr3 rmsk exon 101691893 101692861 8050 + . gene_id "HML2_3q12.3"; transcript_id "HML2_3q12.3"; locus "HML2_3q12.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0023"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	86 chr3 rmsk exon 101692862 101698340 22220 + . gene_id "HML2_3q12.3"; transcript_id "HML2_3q12.3"; locus "HML2_3q12.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0023"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "-2002"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	87 chr3 rmsk exon 101698340 101699951 14507 + . gene_id "HML2_3q12.3"; transcript_id "HML2_3q12.3"; locus "HML2_3q12.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0023"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "-95"; repStart "5826";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	88 chr3 rmsk exon 101700047 101701015 8320 + . gene_id "HML2_3q12.3"; transcript_id "HML2_3q12.3"; locus "HML2_3q12.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0023"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	89 ### HML2_3q13.2 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	90 chr3 rmsk gene 113024277 113033435 . - . gene_id "HML2_3q13.2"; transcript_id "HML2_3q13.2"; locus "HML2_3q13.2"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0024"; model_cov "7148"; model_pct "94.9";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	91 chr3 rmsk exon 113024277 113025236 9337 - . gene_id "HML2_3q13.2"; transcript_id "HML2_3q13.2"; locus "HML2_3q13.2"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0024"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	92 chr3 rmsk exon 113025332 113026948 14772 - . gene_id "HML2_3q13.2"; transcript_id "HML2_3q13.2"; locus "HML2_3q13.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0024"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "5826"; repStart "-95";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	93 chr3 rmsk exon 113026948 113032475 50828 - . gene_id "HML2_3q13.2"; transcript_id "HML2_3q13.2"; locus "HML2_3q13.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0024"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "1"; repStart "-2002";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	94 chr3 rmsk exon 113032476 113033435 9337 - . gene_id "HML2_3q13.2"; transcript_id "HML2_3q13.2"; locus "HML2_3q13.2"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0024"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	95 ### HML2_3q21.2 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	96 chr3 rmsk gene 125890459 125899596 . + . gene_id "HML2_3q21.2"; transcript_id "HML2_3q21.2"; locus "HML2_3q21.2"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0026"; model_cov "7446"; model_pct "98.8";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	97 chr3 rmsk exon 125890459 125891239 6706 + . gene_id "HML2_3q21.2"; transcript_id "HML2_3q21.2"; locus "HML2_3q21.2"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0026"; repClass "LTR"; repEnd "789"; repFamily "ERVK"; repLeft "-179"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	98 chr3 rmsk exon 125891209 125891262 317 + . gene_id "HML2_3q21.2"; transcript_id "HML2_3q21.2"; locus "HML2_3q21.2"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0026"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "915";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	99 chr3 rmsk exon 125891263 125898703 63114 + . gene_id "HML2_3q21.2"; transcript_id "HML2_3q21.2"; locus "HML2_3q21.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0026"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "-89"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	100 chr3 rmsk exon 125898793 125899573 6625 + . gene_id "HML2_3q21.2"; transcript_id "HML2_3q21.2"; locus "HML2_3q21.2"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0026"; repClass "LTR"; repEnd "789"; repFamily "ERVK"; repLeft "-179"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	101 chr3 rmsk exon 125899543 125899596 290 + . gene_id "HML2_3q21.2"; transcript_id "HML2_3q21.2"; locus "HML2_3q21.2"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0026"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "915";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	102 ### HML2_3q24 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	103 chr3 rmsk gene 148563690 148567609 . - . gene_id "HML2_3q24"; transcript_id "HML2_3q24"; locus "HML2_3q24"; category "internal"; intModel "HERVK-int"; locid "HERVK-int_0028"; model_cov "3918"; model_pct "52.0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	104 chr3 rmsk exon 148563690 148567609 35394 - . gene_id "HML2_3q24"; transcript_id "HML2_3q24"; locus "HML2_3q24"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0028"; repClass "LTR"; repEnd "3919"; repFamily "ERVK"; repLeft "1"; repStart "-3617";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	105 ### HML2_3q27.2 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	106 chr3 rmsk gene 185562548 185571727 . - . gene_id "HML2_3q27.2"; transcript_id "HML2_3q27.2"; locus "HML2_3q27.2"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0029"; model_cov "7148"; model_pct "94.9";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	107 chr3 rmsk exon 185562548 185563515 8924 - . gene_id "HML2_3q27.2"; transcript_id "HML2_3q27.2"; locus "HML2_3q27.2"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0029"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	108 chr3 rmsk exon 185563611 185565226 14815 - . gene_id "HML2_3q27.2"; transcript_id "HML2_3q27.2"; locus "HML2_3q27.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0029"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "5826"; repStart "-95";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	109 chr3 rmsk exon 185565226 185570759 50470 - . gene_id "HML2_3q27.2"; transcript_id "HML2_3q27.2"; locus "HML2_3q27.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0029"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "1"; repStart "-2002";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	110 chr3 rmsk exon 185570760 185571727 8884 - . gene_id "HML2_3q27.2"; transcript_id "HML2_3q27.2"; locus "HML2_3q27.2"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0029"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	111 ### HML2_4p16.3a ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	112 chr4 rmsk gene 241200 245565 . + . gene_id "HML2_4p16.3a"; transcript_id "HML2_4p16.3a"; locus "HML2_4p16.3a"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0030"; model_cov "3299"; model_pct "43.8";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	113 chr4 rmsk exon 241200 242201 7488 + . gene_id "HML2_4p16.3a"; transcript_id "HML2_4p16.3a"; locus "HML2_4p16.3a"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0030"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "4";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	114 chr4 rmsk exon 242202 242389 1073 + . gene_id "HML2_4p16.3a"; transcript_id "HML2_4p16.3a"; locus "HML2_4p16.3a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0030"; repClass "LTR"; repEnd "198"; repFamily "ERVK"; repLeft "-7338"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	115 chr4 rmsk exon 242385 245212 15829 + . gene_id "HML2_4p16.3a"; transcript_id "HML2_4p16.3a"; locus "HML2_4p16.3a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0030"; repClass "LTR"; repEnd "3715"; repFamily "ERVK"; repLeft "-3821"; repStart "873";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	116 chr4 rmsk exon 245308 245565 1656 + . gene_id "HML2_4p16.3a"; transcript_id "HML2_4p16.3a"; locus "HML2_4p16.3a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0030"; repClass "LTR"; repEnd "3958"; repFamily "ERVK"; repLeft "-3578"; repStart "3698";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	117 ### HML2_4p16.3b ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	118 chr4 rmsk gene 3977324 3986912 . - . gene_id "HML2_4p16.3b"; transcript_id "HML2_4p16.3b"; locus "HML2_4p16.3b"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0031"; model_cov "7535"; model_pct "100.0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	119 chr4 rmsk exon 3977324 3978367 8576 - . gene_id "HML2_4p16.3b"; transcript_id "HML2_4p16.3b"; locus "HML2_4p16.3b"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0031"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	120 chr4 rmsk exon 3978368 3985909 45400 - . gene_id "HML2_4p16.3b"; transcript_id "HML2_4p16.3b"; locus "HML2_4p16.3b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0031"; repClass "LTR"; repEnd "7536"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	121 chr4 rmsk exon 3985910 3986912 8316 - . gene_id "HML2_4p16.3b"; transcript_id "HML2_4p16.3b"; locus "HML2_4p16.3b"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0031"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	122 ### HML2_4p16.1a ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	123 chr4 rmsk gene 9121786 9131367 . + . gene_id "HML2_4p16.1a"; transcript_id "HML2_4p16.1a"; locus "HML2_4p16.1a"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0034"; model_cov "7446"; model_pct "98.8";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	124 chr4 rmsk exon 9121786 9122809 8752 + . gene_id "HML2_4p16.1a"; transcript_id "HML2_4p16.1a"; locus "HML2_4p16.1a"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0034"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	125 chr4 rmsk exon 9122810 9130255 44130 + . gene_id "HML2_4p16.1a"; transcript_id "HML2_4p16.1a"; locus "HML2_4p16.1a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0034"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "-89"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	126 chr4 rmsk exon 9130345 9131367 8342 + . gene_id "HML2_4p16.1a"; transcript_id "HML2_4p16.1a"; locus "HML2_4p16.1a"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0034"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	127 ### HML2_4p16.1b ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	128 chr4 rmsk gene 9657956 9667550 . + . gene_id "HML2_4p16.1b"; transcript_id "HML2_4p16.1b"; locus "HML2_4p16.1b"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0036"; model_cov "7447"; model_pct "98.8";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	129 chr4 rmsk exon 9657956 9658973 8450 + . gene_id "HML2_4p16.1b"; transcript_id "HML2_4p16.1b"; locus "HML2_4p16.1b"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0036"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	130 chr4 rmsk exon 9658974 9666434 46859 + . gene_id "HML2_4p16.1b"; transcript_id "HML2_4p16.1b"; locus "HML2_4p16.1b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0036"; repClass "LTR"; repEnd "7448"; repFamily "ERVK"; repLeft "-88"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	131 chr4 rmsk exon 9666525 9667550 8382 + . gene_id "HML2_4p16.1b"; transcript_id "HML2_4p16.1b"; locus "HML2_4p16.1b"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0036"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	132 ### HML2_4q13.2 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	133 chr4 rmsk gene 68597991 68603505 . + . gene_id "HML2_4q13.2"; transcript_id "HML2_4q13.2"; locus "HML2_4q13.2"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0037"; model_cov "3562"; model_pct "47.3";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	134 chr4 rmsk exon 68597991 68598948 6942 + . gene_id "HML2_4q13.2"; transcript_id "HML2_4q13.2"; locus "HML2_4q13.2"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0037"; repClass "LTR"; repEnd "955"; repFamily "ERVK"; repLeft "-78"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	135 chr4 rmsk exon 68598949 68602490 20320 + . gene_id "HML2_4q13.2"; transcript_id "HML2_4q13.2"; locus "HML2_4q13.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0037"; repClass "LTR"; repEnd "7511"; repFamily "ERVK"; repLeft "-25"; repStart "3949";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	136 chr4 rmsk exon 68602500 68603505 7736 + . gene_id "HML2_4q13.2"; transcript_id "HML2_4q13.2"; locus "HML2_4q13.2"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0037"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	137 ### HML2_4q32.1 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	138 chr4 rmsk gene 160658786 160660924 . + . gene_id "HML2_4q32.1"; transcript_id "HML2_4q32.1"; locus "HML2_4q32.1"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0038"; model_cov "1186"; model_pct "15.7";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	139 chr4 rmsk exon 160658786 160659753 8801 + . gene_id "HML2_4q32.1"; transcript_id "HML2_4q32.1"; locus "HML2_4q32.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0038"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	140 chr4 rmsk exon 160659754 160660025 2390 + . gene_id "HML2_4q32.1"; transcript_id "HML2_4q32.1"; locus "HML2_4q32.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0038"; repClass "LTR"; repEnd "272"; repFamily "ERVK"; repLeft "-7264"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	141 chr4 rmsk exon 160660008 160660924 8165 + . gene_id "HML2_4q32.1"; transcript_id "HML2_4q32.1"; locus "HML2_4q32.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0038"; repClass "LTR"; repEnd "1338"; repFamily "ERVK"; repLeft "-6198"; repStart "423";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	142 ### HML2_4q32.3 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	143 chr4 rmsk gene 164995688 165002916 . + . gene_id "HML2_4q32.3"; transcript_id "HML2_4q32.3"; locus "HML2_4q32.3"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0040"; model_cov "4910"; model_pct "65.2";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	144 chr4 rmsk exon 164995688 164996655 7694 + . gene_id "HML2_4q32.3"; transcript_id "HML2_4q32.3"; locus "HML2_4q32.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0040"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	145 chr4 rmsk exon 164996656 164999353 21428 + . gene_id "HML2_4q32.3"; transcript_id "HML2_4q32.3"; locus "HML2_4q32.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0040"; repClass "LTR"; repEnd "2716"; repFamily "ERVK"; repLeft "-4820"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	146 chr4 rmsk exon 164999332 164999426 2771 + . gene_id "HML2_4q32.3"; transcript_id "HML2_4q32.3"; locus "HML2_4q32.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0040"; repClass "LTR"; repEnd "5043"; repFamily "ERVK"; repLeft "-2493"; repStart "4952";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	147 chr4 rmsk exon 164999735 165000000 2771 + . gene_id "HML2_4q32.3"; transcript_id "HML2_4q32.3"; locus "HML2_4q32.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0040"; repClass "LTR"; repEnd "5301"; repFamily "ERVK"; repLeft "-2235"; repStart "5044";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	148 chr4 rmsk exon 165000001 165000233 1948 + . gene_id "HML2_4q32.3"; transcript_id "HML2_4q32.3"; locus "HML2_4q32.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0040"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "-2002"; repStart "5302";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	149 chr4 rmsk exon 165000233 165001857 13233 + . gene_id "HML2_4q32.3"; transcript_id "HML2_4q32.3"; locus "HML2_4q32.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0040"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "-95"; repStart "5826";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	150 chr4 rmsk exon 165001953 165002916 7826 + . gene_id "HML2_4q32.3"; transcript_id "HML2_4q32.3"; locus "HML2_4q32.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0040"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	151 ### HML2_4q35.2 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	152 chr4 rmsk gene 190106259 190113546 . - . gene_id "HML2_4q35.2"; transcript_id "HML2_4q35.2"; locus "HML2_4q35.2"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0041"; model_cov "4984"; model_pct "66.1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	153 chr4 rmsk exon 190106259 190107263 7790 - . gene_id "HML2_4q35.2"; transcript_id "HML2_4q35.2"; locus "HML2_4q35.2"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0041"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	154 chr4 rmsk exon 190107266 190108168 5549 - . gene_id "HML2_4q35.2"; transcript_id "HML2_4q35.2"; locus "HML2_4q35.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0041"; repClass "LTR"; repEnd "7534"; repFamily "ERVK"; repLeft "6626"; repStart "-2";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	155 chr4 rmsk exon 190108264 190111540 23124 - . gene_id "HML2_4q35.2"; transcript_id "HML2_4q35.2"; locus "HML2_4q35.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0041"; repClass "LTR"; repEnd "6328"; repFamily "ERVK"; repLeft "3007"; repStart "-1208";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	156 chr4 rmsk exon 190111624 190111683 261 - . gene_id "HML2_4q35.2"; transcript_id "HML2_4q35.2"; locus "HML2_4q35.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0041"; repClass "LTR"; repEnd "820"; repFamily "ERVK"; repLeft "761"; repStart "-6716";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	157 chr4 rmsk exon 190111667 190111959 1729 - . gene_id "HML2_4q35.2"; transcript_id "HML2_4q35.2"; locus "HML2_4q35.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0041"; repClass "LTR"; repEnd "696"; repFamily "ERVK"; repLeft "401"; repStart "-6840";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	158 chr4 rmsk exon 190112160 190112541 2323 - . gene_id "HML2_4q35.2"; transcript_id "HML2_4q35.2"; locus "HML2_4q35.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0041"; repClass "LTR"; repEnd "402"; repFamily "ERVK"; repLeft "1"; repStart "-7134";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	159 chr4 rmsk exon 190112542 190113546 7805 - . gene_id "HML2_4q35.2"; transcript_id "HML2_4q35.2"; locus "HML2_4q35.2"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0041"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "6"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	160 ### HML2_5p13.3 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	161 chr5 rmsk gene 30486653 30496098 . - . gene_id "HML2_5p13.3"; transcript_id "HML2_5p13.3"; locus "HML2_5p13.3"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0042"; model_cov "7440"; model_pct "98.7";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	162 chr5 rmsk exon 30486653 30487612 8378 - . gene_id "HML2_5p13.3"; transcript_id "HML2_5p13.3"; locus "HML2_5p13.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0042"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	163 chr5 rmsk exon 30487708 30495147 66061 - . gene_id "HML2_5p13.3"; transcript_id "HML2_5p13.3"; locus "HML2_5p13.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0042"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "1"; repStart "-95";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	164 chr5 rmsk exon 30495148 30496098 8198 - . gene_id "HML2_5p13.3"; transcript_id "HML2_5p13.3"; locus "HML2_5p13.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0042"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	165 ### HML2_5p12 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	166 chr5 rmsk gene 46000057 46009900 . - . gene_id "HML2_5p12"; transcript_id "HML2_5p12"; locus "HML2_5p12"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0043"; model_cov "7241"; model_pct "96.1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	167 chr5 rmsk exon 46000057 46001004 6385 - . gene_id "HML2_5p12"; transcript_id "HML2_5p12"; locus "HML2_5p12"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0043"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	168 chr5 rmsk exon 46001005 46002716 13121 - . gene_id "HML2_5p12"; transcript_id "HML2_5p12"; locus "HML2_5p12"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0043"; repClass "LTR"; repEnd "7536"; repFamily "ERVK"; repLeft "5826"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	169 chr5 rmsk exon 46002716 46008021 41714 - . gene_id "HML2_5p12"; transcript_id "HML2_5p12"; locus "HML2_5p12"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0043"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "217"; repStart "-2002";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	170 chr5 rmsk exon 46008729 46008936 41714 - . gene_id "HML2_5p12"; transcript_id "HML2_5p12"; locus "HML2_5p12"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0043"; repClass "LTR"; repEnd "216"; repFamily "ERVK"; repLeft "2"; repStart "-7320";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	171 chr5 rmsk exon 46008940 46009900 6205 - . gene_id "HML2_5p12"; transcript_id "HML2_5p12"; locus "HML2_5p12"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0043"; repClass "LTR"; repEnd "965"; repFamily "ERVK"; repLeft "1"; repStart "-3";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	172 ### HML2_5q33.2 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	173 chr5 rmsk gene 154635953 154644655 . - . gene_id "HML2_5q33.2"; transcript_id "HML2_5q33.2"; locus "HML2_5q33.2"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0046"; model_cov "6623"; model_pct "87.9";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	174 chr5 rmsk exon 154635953 154636977 7881 - . gene_id "HML2_5q33.2"; transcript_id "HML2_5q33.2"; locus "HML2_5q33.2"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0046"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "-30"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	175 chr5 rmsk exon 154636980 154640034 20165 - . gene_id "HML2_5q33.2"; transcript_id "HML2_5q33.2"; locus "HML2_5q33.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0046"; repClass "LTR"; repEnd "7534"; repFamily "ERVK"; repLeft "4466"; repStart "-2";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	176 chr5 rmsk exon 154640032 154642817 16400 - . gene_id "HML2_5q33.2"; transcript_id "HML2_5q33.2"; locus "HML2_5q33.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0046"; repClass "LTR"; repEnd "3553"; repFamily "ERVK"; repLeft "743"; repStart "-3983";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	177 chr5 rmsk exon 154642910 154643647 4615 - . gene_id "HML2_5q33.2"; transcript_id "HML2_5q33.2"; locus "HML2_5q33.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0046"; repClass "LTR"; repEnd "746"; repFamily "ERVK"; repLeft "1"; repStart "-6790";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	178 chr5 rmsk exon 154643648 154644655 7899 - . gene_id "HML2_5q33.2"; transcript_id "HML2_5q33.2"; locus "HML2_5q33.2"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0046"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "3"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	179 ### HML2_5q33.3 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	180 chr5 rmsk gene 156657706 156666885 . - . gene_id "HML2_5q33.3"; transcript_id "HML2_5q33.3"; locus "HML2_5q33.3"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0047"; model_cov "7148"; model_pct "94.9";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	181 chr5 rmsk exon 156657706 156658673 8851 - . gene_id "HML2_5q33.3"; transcript_id "HML2_5q33.3"; locus "HML2_5q33.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0047"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	182 chr5 rmsk exon 156658769 156660384 14111 - . gene_id "HML2_5q33.3"; transcript_id "HML2_5q33.3"; locus "HML2_5q33.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0047"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "5826"; repStart "-95";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	183 chr5 rmsk exon 156660384 156665917 47612 - . gene_id "HML2_5q33.3"; transcript_id "HML2_5q33.3"; locus "HML2_5q33.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0047"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "1"; repStart "-2002";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	184 chr5 rmsk exon 156665918 156666885 8861 - . gene_id "HML2_5q33.3"; transcript_id "HML2_5q33.3"; locus "HML2_5q33.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0047"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	185 ### HML2_6p22.1 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	186 chr6 rmsk gene 28682591 28692958 . + . gene_id "HML2_6p22.1"; transcript_id "HML2_6p22.1"; locus "HML2_6p22.1"; category "unknown"; intModel "HERVK-int"; locid "HERVK-int_0049"; model_cov "7588"; model_pct "100.0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	187 chr6 rmsk exon 28682591 28683408 3942 + . gene_id "HML2_6p22.1"; transcript_id "HML2_6p22.1"; locus "HML2_6p22.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0049"; repClass "LTR"; repEnd "965"; repFamily "ERVK"; repLeft "-3"; repStart "189";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	188 chr6 rmsk exon 28683412 28684170 5291 + . gene_id "HML2_6p22.1"; transcript_id "HML2_6p22.1"; locus "HML2_6p22.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0049"; repClass "LTR"; repEnd "776"; repFamily "ERVK"; repLeft "-6760"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	189 chr6 rmsk exon 28684224 28687381 53735 + . gene_id "HML2_6p22.1"; transcript_id "HML2_6p22.1"; locus "HML2_6p22.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0049"; repClass "LTR"; repEnd "3909"; repFamily "ERVK"; repLeft "-3627"; repStart "722";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	190 chr6 rmsk exon 28687382 28688356 6122 + . gene_id "HML2_6p22.1"; transcript_id "HML2_6p22.1"; locus "HML2_6p22.1"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0049"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	191 chr6 rmsk exon 28688357 28692010 53735 + . gene_id "HML2_6p22.1"; transcript_id "HML2_6p22.1"; locus "HML2_6p22.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0049"; repClass "LTR"; repEnd "7536"; repFamily "ERVK"; repLeft "0"; repStart "3910";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	192 chr6 rmsk exon 28692011 28692958 5830 + . gene_id "HML2_6p22.1"; transcript_id "HML2_6p22.1"; locus "HML2_6p22.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0049"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	193 ### HML2_6p21.1 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	194 chr6 rmsk gene 42893671 42903629 . - . gene_id "HML2_6p21.1"; transcript_id "HML2_6p21.1"; locus "HML2_6p21.1"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0050"; model_cov "7529"; model_pct "99.9";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	195 chr6 rmsk exon 42893671 42894666 7663 - . gene_id "HML2_6p21.1"; transcript_id "HML2_6p21.1"; locus "HML2_6p21.1"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0050"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	196 chr6 rmsk exon 42894674 42900373 42072 - . gene_id "HML2_6p21.1"; transcript_id "HML2_6p21.1"; locus "HML2_6p21.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0050"; repClass "LTR"; repEnd "7524"; repFamily "ERVK"; repLeft "1856"; repStart "-12";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	197 chr6 rmsk exon 42900685 42901811 42072 - . gene_id "HML2_6p21.1"; transcript_id "HML2_6p21.1"; locus "HML2_6p21.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0050"; repClass "LTR"; repEnd "1855"; repFamily "ERVK"; repLeft "743"; repStart "-5681";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	198 chr6 rmsk exon 42901891 42902625 4270 - . gene_id "HML2_6p21.1"; transcript_id "HML2_6p21.1"; locus "HML2_6p21.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0050"; repClass "LTR"; repEnd "758"; repFamily "ERVK"; repLeft "9"; repStart "-6778";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	199 chr6 rmsk exon 42902633 42903629 7599 - . gene_id "HML2_6p21.1"; transcript_id "HML2_6p21.1"; locus "HML2_6p21.1"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0050"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	200 ### HML2_6q11.1 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	201 chr6 rmsk gene 60654987 60660975 . + . gene_id "HML2_6q11.1"; transcript_id "HML2_6q11.1"; locus "HML2_6q11.1"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0051"; model_cov "3472"; model_pct "46.1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	202 chr6 rmsk exon 60654987 60656012 8037 + . gene_id "HML2_6q11.1"; transcript_id "HML2_6q11.1"; locus "HML2_6q11.1"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0051"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	203 chr6 rmsk exon 60656013 60656707 3744 + . gene_id "HML2_6q11.1"; transcript_id "HML2_6q11.1"; locus "HML2_6q11.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0051"; repClass "LTR"; repEnd "696"; repFamily "ERVK"; repLeft "-6840"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	204 chr6 rmsk exon 60656834 60659432 16583 + . gene_id "HML2_6q11.1"; transcript_id "HML2_6q11.1"; locus "HML2_6q11.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0051"; repClass "LTR"; repEnd "5613"; repFamily "ERVK"; repLeft "-1923"; repStart "3007";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	205 chr6 rmsk exon 60659770 60659941 1027 + . gene_id "HML2_6q11.1"; transcript_id "HML2_6q11.1"; locus "HML2_6q11.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0051"; repClass "LTR"; repEnd "7528"; repFamily "ERVK"; repLeft "-8"; repStart "7357";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	206 chr6 rmsk exon 60659956 60660975 7824 + . gene_id "HML2_6q11.1"; transcript_id "HML2_6q11.1"; locus "HML2_6q11.1"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0051"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	207 ### HML2_6q14.1 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	208 chr6 rmsk gene 77716945 77726366 . - . gene_id "HML2_6q14.1"; transcript_id "HML2_6q14.1"; locus "HML2_6q14.1"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0053"; model_cov "7440"; model_pct "98.7";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	209 chr6 rmsk exon 77716945 77717904 8674 - . gene_id "HML2_6q14.1"; transcript_id "HML2_6q14.1"; locus "HML2_6q14.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0053"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	210 chr6 rmsk exon 77718000 77725406 48157 - . gene_id "HML2_6q14.1"; transcript_id "HML2_6q14.1"; locus "HML2_6q14.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0053"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "1"; repStart "-95";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	211 chr6 rmsk exon 77725407 77726366 8726 - . gene_id "HML2_6q14.1"; transcript_id "HML2_6q14.1"; locus "HML2_6q14.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0053"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	212 ### HML2_6q25.1 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	213 chr6 rmsk gene 150859613 150862438 . + . gene_id "HML2_6q25.1"; transcript_id "HML2_6q25.1"; locus "HML2_6q25.1"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0054"; model_cov "1757"; model_pct "23.3";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	214 chr6 rmsk exon 150859613 150861371 13136 + . gene_id "HML2_6q25.1"; transcript_id "HML2_6q25.1"; locus "HML2_6q25.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0054"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "-95"; repStart "5684";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	215 chr6 rmsk exon 150861466 150862438 6300 + . gene_id "HML2_6q25.1"; transcript_id "HML2_6q25.1"; locus "HML2_6q25.1"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0054"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	216 ### HML2_7p22.1 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	217 chr7 rmsk gene 4582426 4600400 . - . gene_id "HML2_7p22.1"; transcript_id "HML2_7p22.1"; locus "HML2_7p22.1"; category "tandem*"; intModel "HERVK-int"; locid "HERVK-int_0055"; model_cov "7440"; model_pct "98.7";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	218 chr7 rmsk exon 4582426 4583393 8941 - . gene_id "HML2_7p22.1"; transcript_id "HML2_7p22.1"; locus "HML2_7p22.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0055"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	219 chr7 rmsk exon 4583489 4590929 68784 - . gene_id "HML2_7p22.1"; transcript_id "HML2_7p22.1"; locus "HML2_7p22.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0055"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "1"; repStart "-95";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	220 chr7 rmsk exon 4590930 4591897 8936 - . gene_id "HML2_7p22.1"; transcript_id "HML2_7p22.1"; locus "HML2_7p22.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0055"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	221 chr7 rmsk exon 4591993 4599432 68780 - . gene_id "HML2_7p22.1"; transcript_id "HML2_7p22.1"; locus "HML2_7p22.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0055"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "1"; repStart "-95";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	222 chr7 rmsk exon 4599433 4600400 8980 - . gene_id "HML2_7p22.1"; transcript_id "HML2_7p22.1"; locus "HML2_7p22.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0055"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	223 ### HML2_7q11.21 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	224 chr7 rmsk gene 66004684 66007803 . - . gene_id "HML2_7q11.21"; transcript_id "HML2_7q11.21"; locus "HML2_7q11.21"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0058"; model_cov "2029"; model_pct "26.9";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	225 chr7 rmsk exon 66004684 66005676 8096 - . gene_id "HML2_7q11.21"; transcript_id "HML2_7q11.21"; locus "HML2_7q11.21"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0058"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	226 chr7 rmsk exon 66005766 66007803 11693 - . gene_id "HML2_7q11.21"; transcript_id "HML2_7q11.21"; locus "HML2_7q11.21"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0058"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "5418"; repStart "-89";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	227 ### HML2_7q22.2 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	228 chr7 rmsk gene 104748902 104752819 . - . gene_id "HML2_7q22.2"; transcript_id "HML2_7q22.2"; locus "HML2_7q22.2"; category "internal"; intModel "HERVK-int"; locid "HERVK-int_0059"; model_cov "3915"; model_pct "52.0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	229 chr7 rmsk exon 104748902 104752819 33350 - . gene_id "HML2_7q22.2"; transcript_id "HML2_7q22.2"; locus "HML2_7q22.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0059"; repClass "LTR"; repEnd "3919"; repFamily "ERVK"; repLeft "4"; repStart "-3617";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	230 ### HML2_7q34 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	231 chr7 rmsk gene 141752118 141756138 . - . gene_id "HML2_7q34"; transcript_id "HML2_7q34"; locus "HML2_7q34"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0060"; model_cov "3914"; model_pct "51.9";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	232 chr7 rmsk exon 141752118 141755274 25017 - . gene_id "HML2_7q34"; transcript_id "HML2_7q34"; locus "HML2_7q34"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0060"; repClass "LTR"; repEnd "3918"; repFamily "ERVK"; repLeft "743"; repStart "-3618";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	233 chr7 rmsk exon 141755372 141756103 5407 - . gene_id "HML2_7q34"; transcript_id "HML2_7q34"; locus "HML2_7q34"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0060"; repClass "LTR"; repEnd "741"; repFamily "ERVK"; repLeft "2"; repStart "-6795";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	234 chr7 rmsk exon 141756105 141756138 282 - . gene_id "HML2_7q34"; transcript_id "HML2_7q34"; locus "HML2_7q34"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0060"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "969"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	235 ### HML2_8p23.1a ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	236 chr8 rmsk gene 7497875 7502767 . - . gene_id "HML2_8p23.1a"; transcript_id "HML2_8p23.1a"; locus "HML2_8p23.1a"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0063"; model_cov "3854"; model_pct "51.1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	237 chr8 rmsk exon 7497875 7498842 8965 - . gene_id "HML2_8p23.1a"; transcript_id "HML2_8p23.1a"; locus "HML2_8p23.1a"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0063"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	238 chr8 rmsk exon 7498938 7500000 9764 - . gene_id "HML2_8p23.1a"; transcript_id "HML2_8p23.1a"; locus "HML2_8p23.1a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0063"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "6379"; repStart "-95";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	239 chr8 rmsk exon 7500001 7502767 56636 - . gene_id "HML2_8p23.1a"; transcript_id "HML2_8p23.1a"; locus "HML2_8p23.1a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0063"; repClass "LTR"; repEnd "6378"; repFamily "ERVK"; repLeft "3586"; repStart "-1158";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	240 ### HML2_8p23.1b ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	241 chr8 rmsk gene 7502828 7507337 . - . gene_id "HML2_8p23.1b"; transcript_id "HML2_8p23.1b"; locus "HML2_8p23.1b"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0064"; model_cov "3584"; model_pct "47.6";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	242 chr8 rmsk exon 7502828 7506377 56636 - . gene_id "HML2_8p23.1b"; transcript_id "HML2_8p23.1b"; locus "HML2_8p23.1b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0064"; repClass "LTR"; repEnd "6378"; repFamily "ERVK"; repLeft "2794"; repStart "-1158";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	243 chr8 rmsk exon 7506378 7507337 8874 - . gene_id "HML2_8p23.1b"; transcript_id "HML2_8p23.1b"; locus "HML2_8p23.1b"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0064"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	244 ### HML2_8p23.1c ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	245 chr8 rmsk gene 8197178 8206699 . + . gene_id "HML2_8p23.1c"; transcript_id "HML2_8p23.1c"; locus "HML2_8p23.1c"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0066"; model_cov "7446"; model_pct "98.8";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	246 chr8 rmsk exon 8197178 8198203 8731 + . gene_id "HML2_8p23.1c"; transcript_id "HML2_8p23.1c"; locus "HML2_8p23.1c"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0066"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	247 chr8 rmsk exon 8198204 8205586 41196 + . gene_id "HML2_8p23.1c"; transcript_id "HML2_8p23.1c"; locus "HML2_8p23.1c"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0066"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "-89"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	248 chr8 rmsk exon 8205676 8206699 8476 + . gene_id "HML2_8p23.1c"; transcript_id "HML2_8p23.1c"; locus "HML2_8p23.1c"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0066"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	249 ### HML2_8p23.1d ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	250 chr8 rmsk gene 12216461 12225988 . - . gene_id "HML2_8p23.1d"; transcript_id "HML2_8p23.1d"; locus "HML2_8p23.1d"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0067"; model_cov "7365"; model_pct "97.7";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	251 chr8 rmsk exon 12216461 12217484 8110 - . gene_id "HML2_8p23.1d"; transcript_id "HML2_8p23.1d"; locus "HML2_8p23.1d"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0067"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	252 chr8 rmsk exon 12217574 12223144 35557 - . gene_id "HML2_8p23.1d"; transcript_id "HML2_8p23.1d"; locus "HML2_8p23.1d"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0067"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "1872"; repStart "-89";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	253 chr8 rmsk exon 12223176 12224961 7773 - . gene_id "HML2_8p23.1d"; transcript_id "HML2_8p23.1d"; locus "HML2_8p23.1d"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0067"; repClass "LTR"; repEnd "1893"; repFamily "ERVK"; repLeft "103"; repStart "-5643";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	254 chr8 rmsk exon 12224962 12225988 8788 - . gene_id "HML2_8p23.1d"; transcript_id "HML2_8p23.1d"; locus "HML2_8p23.1d"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0067"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	255 ### HML2_8p23.1e ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	256 chr8 rmsk gene 12458983 12461064 . - . gene_id "HML2_8p23.1e"; transcript_id "HML2_8p23.1e"; locus "HML2_8p23.1e"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0068"; model_cov "998"; model_pct "13.2";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	257 chr8 rmsk exon 12458983 12460006 8570 - . gene_id "HML2_8p23.1e"; transcript_id "HML2_8p23.1e"; locus "HML2_8p23.1e"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0068"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	258 chr8 rmsk exon 12460096 12461064 44166 - . gene_id "HML2_8p23.1e"; transcript_id "HML2_8p23.1e"; locus "HML2_8p23.1e"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0068"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "6449"; repStart "-89";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	259 ### HML2_8p23.1f ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	260 chr8 rmsk gene 12461223 12468498 . - . gene_id "HML2_8p23.1f"; transcript_id "HML2_8p23.1f"; locus "HML2_8p23.1f"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0069"; model_cov "6447"; model_pct "85.5";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	261 chr8 rmsk exon 12461223 12467471 44166 - . gene_id "HML2_8p23.1f"; transcript_id "HML2_8p23.1f"; locus "HML2_8p23.1f"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0069"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "1000"; repStart "-89";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	262 chr8 rmsk exon 12467472 12468498 8725 - . gene_id "HML2_8p23.1f"; transcript_id "HML2_8p23.1f"; locus "HML2_8p23.1f"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0069"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	263 ### HML2_8p22 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	264 chr8 rmsk gene 17908096 17916431 . - . gene_id "HML2_8p22"; transcript_id "HML2_8p22"; locus "HML2_8p22"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0072"; model_cov "7010"; model_pct "93.0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	265 chr8 rmsk exon 17908096 17912373 17248 - . gene_id "HML2_8p22"; transcript_id "HML2_8p22"; locus "HML2_8p22"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0072"; repClass "LTR"; repEnd "7536"; repFamily "ERVK"; repLeft "3280"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	266 chr8 rmsk exon 17912665 17914948 17248 - . gene_id "HML2_8p22"; transcript_id "HML2_8p22"; locus "HML2_8p22"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0072"; repClass "LTR"; repEnd "3279"; repFamily "ERVK"; repLeft "966"; repStart "-4257";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	267 chr8 rmsk exon 17915408 17915839 970 - . gene_id "HML2_8p22"; transcript_id "HML2_8p22"; locus "HML2_8p22"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0072"; repClass "LTR"; repEnd "442"; repFamily "ERVK"; repLeft "1"; repStart "-7094";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	268 chr8 rmsk exon 17916217 17916431 252 - . gene_id "HML2_8p22"; transcript_id "HML2_8p22"; locus "HML2_8p22"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0072"; repClass "LTR"; repEnd "510"; repFamily "ERVK"; repLeft "279"; repStart "-458";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	269 ### HML2_8q11.1a ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	270 chr8 rmsk gene 46264028 46267723 . - . gene_id "HML2_8q11.1a"; transcript_id "HML2_8q11.1a"; locus "HML2_8q11.1a"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0073"; model_cov "2666"; model_pct "35.4";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	271 chr8 rmsk exon 46264028 46265053 7799 - . gene_id "HML2_8q11.1a"; transcript_id "HML2_8q11.1a"; locus "HML2_8q11.1a"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0073"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	272 chr8 rmsk exon 46265056 46267136 11384 - . gene_id "HML2_8q11.1a"; transcript_id "HML2_8q11.1a"; locus "HML2_8q11.1a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0073"; repClass "LTR"; repEnd "7534"; repFamily "ERVK"; repLeft "5462"; repStart "-2";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	273 chr8 rmsk exon 46267142 46267723 3196 - . gene_id "HML2_8q11.1a"; transcript_id "HML2_8q11.1a"; locus "HML2_8q11.1a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0073"; repClass "LTR"; repEnd "652"; repFamily "ERVK"; repLeft "58"; repStart "-6884";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	274 ### HML2_8q11.1b ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	275 chr8 rmsk gene 46267760 46272039 . - . gene_id "HML2_8q11.1b"; transcript_id "HML2_8q11.1b"; locus "HML2_8q11.1b"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0074"; model_cov "5442"; model_pct "72.2";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	276 chr8 rmsk exon 46267760 46271002 15126 - . gene_id "HML2_8q11.1b"; transcript_id "HML2_8q11.1b"; locus "HML2_8q11.1b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0074"; repClass "LTR"; repEnd "5476"; repFamily "ERVK"; repLeft "34"; repStart "-2060";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	277 chr8 rmsk exon 46271034 46272039 7285 - . gene_id "HML2_8q11.1b"; transcript_id "HML2_8q11.1b"; locus "HML2_8q11.1b"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0074"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	278 ### HML2_8q24.3a ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	279 chr8 rmsk gene 139459906 139462993 . - . gene_id "HML2_8q24.3a"; transcript_id "HML2_8q24.3a"; locus "HML2_8q24.3a"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0075"; model_cov "2025"; model_pct "26.9";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	280 chr8 rmsk exon 139459906 139460873 8925 - . gene_id "HML2_8q24.3a"; transcript_id "HML2_8q24.3a"; locus "HML2_8q24.3a"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0075"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	281 chr8 rmsk exon 139460969 139461717 6940 - . gene_id "HML2_8q24.3a"; transcript_id "HML2_8q24.3a"; locus "HML2_8q24.3a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0075"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "6693"; repStart "-95";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	282 chr8 rmsk exon 139461716 139462993 11668 - . gene_id "HML2_8q24.3a"; transcript_id "HML2_8q24.3a"; locus "HML2_8q24.3a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0075"; repClass "LTR"; repEnd "1278"; repFamily "ERVK"; repLeft "1"; repStart "-6258";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	283 ### HML2_8q24.3b ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	284 chr8 rmsk gene 145021244 145028834 . - . gene_id "HML2_8q24.3b"; transcript_id "HML2_8q24.3b"; locus "HML2_8q24.3b"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0076"; model_cov "5527"; model_pct "73.3";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	285 chr8 rmsk exon 145021244 145022259 8134 - . gene_id "HML2_8q24.3b"; transcript_id "HML2_8q24.3b"; locus "HML2_8q24.3b"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0076"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	286 chr8 rmsk exon 145022262 145026351 27966 - . gene_id "HML2_8q24.3b"; transcript_id "HML2_8q24.3b"; locus "HML2_8q24.3b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0076"; repClass "LTR"; repEnd "7534"; repFamily "ERVK"; repLeft "3452"; repStart "-2";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	287 chr8 rmsk exon 145026350 145027823 7746 - . gene_id "HML2_8q24.3b"; transcript_id "HML2_8q24.3b"; locus "HML2_8q24.3b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0076"; repClass "LTR"; repEnd "1446"; repFamily "ERVK"; repLeft "1"; repStart "-6090";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	288 chr8 rmsk exon 145027824 145028834 8116 - . gene_id "HML2_8q24.3b"; transcript_id "HML2_8q24.3b"; locus "HML2_8q24.3b"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0076"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "2"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	289 ### HML2_9q34.11 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	290 chr9 rmsk gene 128850236 128857457 . + . gene_id "HML2_9q34.11"; transcript_id "HML2_9q34.11"; locus "HML2_9q34.11"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0077"; model_cov "7533"; model_pct "100.0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	291 chr9 rmsk exon 128850236 128851238 7849 + . gene_id "HML2_9q34.11"; transcript_id "HML2_9q34.11"; locus "HML2_9q34.11"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0077"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	292 chr9 rmsk exon 128851239 128856449 16412 + . gene_id "HML2_9q34.11"; transcript_id "HML2_9q34.11"; locus "HML2_9q34.11"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0077"; repClass "LTR"; repEnd "7534"; repFamily "ERVK"; repLeft "-2"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	293 chr9 rmsk exon 128856452 128857457 7931 + . gene_id "HML2_9q34.11"; transcript_id "HML2_9q34.11"; locus "HML2_9q34.11"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0077"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	294 ### HML2_9q34.3 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	295 chr9 rmsk gene 136780314 136789776 . - . gene_id "HML2_9q34.3"; transcript_id "HML2_9q34.3"; locus "HML2_9q34.3"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0078"; model_cov "5732"; model_pct "76.1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	296 chr9 rmsk exon 136780314 136781296 6274 - . gene_id "HML2_9q34.3"; transcript_id "HML2_9q34.3"; locus "HML2_9q34.3"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0078"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	297 chr9 rmsk exon 136781297 136781482 1708 - . gene_id "HML2_9q34.3"; transcript_id "HML2_9q34.3"; locus "HML2_9q34.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0078"; repClass "LTR"; repEnd "7536"; repFamily "ERVK"; repLeft "7350"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	298 chr9 rmsk exon 136781788 136781880 1708 - . gene_id "HML2_9q34.3"; transcript_id "HML2_9q34.3"; locus "HML2_9q34.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0078"; repClass "LTR"; repEnd "7349"; repFamily "ERVK"; repLeft "7258"; repStart "-187";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	299 chr9 rmsk exon 136781866 136783596 11943 - . gene_id "HML2_9q34.3"; transcript_id "HML2_9q34.3"; locus "HML2_9q34.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0078"; repClass "LTR"; repEnd "5592"; repFamily "ERVK"; repLeft "3860"; repStart "-1944";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	300 chr9 rmsk exon 136783849 136785013 19279 - . gene_id "HML2_9q34.3"; transcript_id "HML2_9q34.3"; locus "HML2_9q34.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0078"; repClass "LTR"; repEnd "3710"; repFamily "ERVK"; repLeft "2565"; repStart "-3826";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	301 chr9 rmsk exon 136786163 136787981 19279 - . gene_id "HML2_9q34.3"; transcript_id "HML2_9q34.3"; locus "HML2_9q34.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0078"; repClass "LTR"; repEnd "2564"; repFamily "ERVK"; repLeft "743"; repStart "-4972";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	302 chr9 rmsk exon 136788061 136788797 4132 - . gene_id "HML2_9q34.3"; transcript_id "HML2_9q34.3"; locus "HML2_9q34.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0078"; repClass "LTR"; repEnd "758"; repFamily "ERVK"; repLeft "1"; repStart "-6778";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	303 chr9 rmsk exon 136788798 136789776 6413 - . gene_id "HML2_9q34.3"; transcript_id "HML2_9q34.3"; locus "HML2_9q34.3"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0078"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	304 ### HML2_10p14 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	305 chr10 rmsk gene 6824179 6833641 . - . gene_id "HML2_10p14"; transcript_id "HML2_10p14"; locus "HML2_10p14"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0079"; model_cov "7440"; model_pct "98.7";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	306 chr10 rmsk exon 6824179 6825146 7814 - . gene_id "HML2_10p14"; transcript_id "HML2_10p14"; locus "HML2_10p14"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0079"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	307 chr10 rmsk exon 6825242 6832673 63906 - . gene_id "HML2_10p14"; transcript_id "HML2_10p14"; locus "HML2_10p14"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0079"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "1"; repStart "-95";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	308 chr10 rmsk exon 6832674 6833641 7901 - . gene_id "HML2_10p14"; transcript_id "HML2_10p14"; locus "HML2_10p14"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0079"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	309 ### HML2_10q24.2 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	310 chr10 rmsk gene 99820812 99827988 . - . gene_id "HML2_10q24.2"; transcript_id "HML2_10q24.2"; locus "HML2_10q24.2"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0081"; model_cov "6068"; model_pct "80.5";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	311 chr10 rmsk exon 99820812 99821797 8326 - . gene_id "HML2_10q24.2"; transcript_id "HML2_10q24.2"; locus "HML2_10q24.2"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0081"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	312 chr10 rmsk exon 99821893 99827959 54777 - . gene_id "HML2_10q24.2"; transcript_id "HML2_10q24.2"; locus "HML2_10q24.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0081"; repClass "LTR"; repEnd "6069"; repFamily "ERVK"; repLeft "1"; repStart "-1467";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	313 chr10 rmsk exon 99827960 99827988 254 - . gene_id "HML2_10q24.2"; transcript_id "HML2_10q24.2"; locus "HML2_10q24.2"; repName "LTR5"; geneRegion "ltr"; locid "HERVK-int_0081"; repClass "LTR"; repEnd "969"; repFamily "ERVK"; repLeft "941"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	314 ### HML2_11p15.4a ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	315 chr11 rmsk gene 3447426 3456979 . - . gene_id "HML2_11p15.4a"; transcript_id "HML2_11p15.4a"; locus "HML2_11p15.4a"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0082"; model_cov "7535"; model_pct "100.0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	316 chr11 rmsk exon 3447426 3448449 8563 - . gene_id "HML2_11p15.4a"; transcript_id "HML2_11p15.4a"; locus "HML2_11p15.4a"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0082"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	317 chr11 rmsk exon 3448450 3455952 47463 - . gene_id "HML2_11p15.4a"; transcript_id "HML2_11p15.4a"; locus "HML2_11p15.4a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0082"; repClass "LTR"; repEnd "7536"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	318 chr11 rmsk exon 3455953 3456979 8618 - . gene_id "HML2_11p15.4a"; transcript_id "HML2_11p15.4a"; locus "HML2_11p15.4a"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0082"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	319 ### HML2_11p15.4b ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	320 chr11 rmsk gene 4459435 4461473 . - . gene_id "HML2_11p15.4b"; transcript_id "HML2_11p15.4b"; locus "HML2_11p15.4b"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0084"; model_cov "817"; model_pct "10.8";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	321 chr11 rmsk exon 4459435 4459640 1531 - . gene_id "HML2_11p15.4b"; transcript_id "HML2_11p15.4b"; locus "HML2_11p15.4b"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0084"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "789"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	322 chr11 rmsk exon 4459658 4459795 611 - . gene_id "HML2_11p15.4b"; transcript_id "HML2_11p15.4b"; locus "HML2_11p15.4b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0084"; repClass "LTR"; repEnd "3010"; repFamily "ERVK"; repLeft "2888"; repStart "-4526";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	323 chr11 rmsk exon 4459781 4460462 4101 - . gene_id "HML2_11p15.4b"; transcript_id "HML2_11p15.4b"; locus "HML2_11p15.4b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0084"; repClass "LTR"; repEnd "696"; repFamily "ERVK"; repLeft "1"; repStart "-6840";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	324 chr11 rmsk exon 4460468 4461473 8224 - . gene_id "HML2_11p15.4b"; transcript_id "HML2_11p15.4b"; locus "HML2_11p15.4b"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0084"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "4"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	325 ### HML2_11q12.1 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	326 chr11 rmsk gene 59000009 59005723 . + . gene_id "HML2_11q12.1"; transcript_id "HML2_11q12.1"; locus "HML2_11q12.1"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0085"; model_cov "5004"; model_pct "66.4";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	327 chr11 rmsk exon 59000009 59000147 654 + . gene_id "HML2_11q12.1"; transcript_id "HML2_11q12.1"; locus "HML2_11q12.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0085"; repClass "LTR"; repEnd "696"; repFamily "ERVK"; repLeft "-6840"; repStart "559";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	328 chr11 rmsk exon 59000270 59002749 13680 + . gene_id "HML2_11q12.1"; transcript_id "HML2_11q12.1"; locus "HML2_11q12.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0085"; repClass "LTR"; repEnd "5434"; repFamily "ERVK"; repLeft "-2102"; repStart "2427";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	329 chr11 rmsk exon 59002774 59004639 10154 + . gene_id "HML2_11q12.1"; transcript_id "HML2_11q12.1"; locus "HML2_11q12.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0085"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "-89"; repStart "5587";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	330 chr11 rmsk exon 59004729 59005723 7568 + . gene_id "HML2_11q12.1"; transcript_id "HML2_11q12.1"; locus "HML2_11q12.1"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0085"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	331 ### HML2_11q12.3a ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	332 chr11 rmsk gene 62368491 62370999 . - . gene_id "HML2_11q12.3a"; transcript_id "HML2_11q12.3a"; locus "HML2_11q12.3a"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0086"; model_cov "1457"; model_pct "19.3";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	333 chr11 rmsk exon 62368491 62369451 5940 - . gene_id "HML2_11q12.3a"; transcript_id "HML2_11q12.3a"; locus "HML2_11q12.3a"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0086"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	334 chr11 rmsk exon 62369545 62370999 11630 - . gene_id "HML2_11q12.3a"; transcript_id "HML2_11q12.3a"; locus "HML2_11q12.3a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0086"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "5984"; repStart "-95";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	335 ### HML2_11q12.3b ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	336 chr11 rmsk gene 62375545 62383091 . - . gene_id "HML2_11q12.3b"; transcript_id "HML2_11q12.3b"; locus "HML2_11q12.3b"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0087"; model_cov "6011"; model_pct "79.8";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	337 chr11 rmsk exon 62375545 62375829 42079 - . gene_id "HML2_11q12.3b"; transcript_id "HML2_11q12.3b"; locus "HML2_11q12.3b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0087"; repClass "LTR"; repEnd "5998"; repFamily "ERVK"; repLeft "5718"; repStart "-1538";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	338 chr11 rmsk exon 62376126 62381099 42079 - . gene_id "HML2_11q12.3b"; transcript_id "HML2_11q12.3b"; locus "HML2_11q12.3b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0087"; repClass "LTR"; repEnd "5717"; repFamily "ERVK"; repLeft "743"; repStart "-1819";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	339 chr11 rmsk exon 62381171 62381929 5179 - . gene_id "HML2_11q12.3b"; transcript_id "HML2_11q12.3b"; locus "HML2_11q12.3b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0087"; repClass "LTR"; repEnd "758"; repFamily "ERVK"; repLeft "1"; repStart "-6778";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	340 chr11 rmsk exon 62381930 62382006 5110 - . gene_id "HML2_11q12.3b"; transcript_id "HML2_11q12.3b"; locus "HML2_11q12.3b"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0087"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "892"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	341 chr11 rmsk exon 62382200 62383091 5294 - . gene_id "HML2_11q12.3b"; transcript_id "HML2_11q12.3b"; locus "HML2_11q12.3b"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0087"; repClass "LTR"; repEnd "891"; repFamily "ERVK"; repLeft "-33"; repStart "-77";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	342 ### HML2_11q22.1 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	343 chr11 rmsk gene 101695063 101704528 . + . gene_id "HML2_11q22.1"; transcript_id "HML2_11q22.1"; locus "HML2_11q22.1"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0091"; model_cov "7439"; model_pct "98.7";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	344 chr11 rmsk exon 101695063 101696030 8870 + . gene_id "HML2_11q22.1"; transcript_id "HML2_11q22.1"; locus "HML2_11q22.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0091"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	345 chr11 rmsk exon 101696031 101699581 62466 + . gene_id "HML2_11q22.1"; transcript_id "HML2_11q22.1"; locus "HML2_11q22.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0091"; repClass "LTR"; repEnd "3583"; repFamily "ERVK"; repLeft "-3953"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	346 chr11 rmsk exon 101699645 101703465 62466 + . gene_id "HML2_11q22.1"; transcript_id "HML2_11q22.1"; locus "HML2_11q22.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0091"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "-95"; repStart "3584";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	347 chr11 rmsk exon 101703561 101704528 8897 + . gene_id "HML2_11q22.1"; transcript_id "HML2_11q22.1"; locus "HML2_11q22.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0091"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	348 ### HML2_11q23.3 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	349 chr11 rmsk gene 118721015 118730174 . - . gene_id "HML2_11q23.3"; transcript_id "HML2_11q23.3"; locus "HML2_11q23.3"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0092"; model_cov "7243"; model_pct "96.1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	350 chr11 rmsk exon 118721015 118721981 8482 - . gene_id "HML2_11q23.3"; transcript_id "HML2_11q23.3"; locus "HML2_11q23.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0092"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	351 chr11 rmsk exon 118721982 118723687 14138 - . gene_id "HML2_11q23.3"; transcript_id "HML2_11q23.3"; locus "HML2_11q23.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0092"; repClass "LTR"; repEnd "7536"; repFamily "ERVK"; repLeft "5826"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	352 chr11 rmsk exon 118723687 118729206 48710 - . gene_id "HML2_11q23.3"; transcript_id "HML2_11q23.3"; locus "HML2_11q23.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0092"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "1"; repStart "-2002";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	353 chr11 rmsk exon 118729207 118730174 8460 - . gene_id "HML2_11q23.3"; transcript_id "HML2_11q23.3"; locus "HML2_11q23.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0092"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	354 ### HML2_12p11.1 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	355 chr12 rmsk gene 34619620 34629282 . - . gene_id "HML2_12p11.1"; transcript_id "HML2_12p11.1"; locus "HML2_12p11.1"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0093"; model_cov "7199"; model_pct "95.5";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	356 chr12 rmsk exon 34619620 34620533 4503 - . gene_id "HML2_12p11.1"; transcript_id "HML2_12p11.1"; locus "HML2_12p11.1"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0093"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	357 chr12 rmsk exon 34620629 34621290 5119 - . gene_id "HML2_12p11.1"; transcript_id "HML2_12p11.1"; locus "HML2_12p11.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0093"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "6780"; repStart "-95";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	358 chr12 rmsk exon 34621720 34627344 41180 - . gene_id "HML2_12p11.1"; transcript_id "HML2_12p11.1"; locus "HML2_12p11.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0093"; repClass "LTR"; repEnd "6777"; repFamily "ERVK"; repLeft "1130"; repStart "-759";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	359 chr12 rmsk exon 34627339 34627473 876 - . gene_id "HML2_12p11.1"; transcript_id "HML2_12p11.1"; locus "HML2_12p11.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0093"; repClass "LTR"; repEnd "877"; repFamily "ERVK"; repLeft "743"; repStart "-6659";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	360 chr12 rmsk exon 34627553 34628301 4435 - . gene_id "HML2_12p11.1"; transcript_id "HML2_12p11.1"; locus "HML2_12p11.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0093"; repClass "LTR"; repEnd "758"; repFamily "ERVK"; repLeft "1"; repStart "-6778";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	361 chr12 rmsk exon 34628302 34629282 5536 - . gene_id "HML2_12p11.1"; transcript_id "HML2_12p11.1"; locus "HML2_12p11.1"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0093"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "6"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	362 ### HML2_12q14.1 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	363 chr12 rmsk gene 58327459 58336915 . - . gene_id "HML2_12q14.1"; transcript_id "HML2_12q14.1"; locus "HML2_12q14.1"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0094"; model_cov "7440"; model_pct "98.7";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	364 chr12 rmsk exon 58327459 58328426 8871 - . gene_id "HML2_12q14.1"; transcript_id "HML2_12q14.1"; locus "HML2_12q14.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0094"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	365 chr12 rmsk exon 58328522 58335947 49293 - . gene_id "HML2_12q14.1"; transcript_id "HML2_12q14.1"; locus "HML2_12q14.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0094"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "1"; repStart "-95";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	366 chr12 rmsk exon 58335948 58336915 8873 - . gene_id "HML2_12q14.1"; transcript_id "HML2_12q14.1"; locus "HML2_12q14.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0094"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	367 ### HML2_12q24.33 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	368 chr12 rmsk gene 133090536 133096478 . - . gene_id "HML2_12q24.33"; transcript_id "HML2_12q24.33"; locus "HML2_12q24.33"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0097"; model_cov "2905"; model_pct "38.5";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	369 chr12 rmsk exon 133090536 133091545 8594 - . gene_id "HML2_12q24.33"; transcript_id "HML2_12q24.33"; locus "HML2_12q24.33"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0097"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	370 chr12 rmsk exon 133091560 133093500 12073 - . gene_id "HML2_12q24.33"; transcript_id "HML2_12q24.33"; locus "HML2_12q24.33"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0097"; repClass "LTR"; repEnd "7522"; repFamily "ERVK"; repLeft "5587"; repStart "-14";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	371 chr12 rmsk exon 133093506 133093784 2003 - . gene_id "HML2_12q24.33"; transcript_id "HML2_12q24.33"; locus "HML2_12q24.33"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0097"; repClass "LTR"; repEnd "5462"; repFamily "ERVK"; repLeft "5187"; repStart "-2074";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	372 chr12 rmsk exon 133093979 133095471 4356 - . gene_id "HML2_12q24.33"; transcript_id "HML2_12q24.33"; locus "HML2_12q24.33"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0097"; repClass "LTR"; repEnd "696"; repFamily "ERVK"; repLeft "1"; repStart "-6840";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	373 chr12 rmsk exon 133095472 133096478 8541 - . gene_id "HML2_12q24.33"; transcript_id "HML2_12q24.33"; locus "HML2_12q24.33"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0097"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	374 ### HML2_14q11.2 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	375 chr14 rmsk gene 24009696 24015776 . - . gene_id "HML2_14q11.2"; transcript_id "HML2_14q11.2"; locus "HML2_14q11.2"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0099"; model_cov "3838"; model_pct "50.9";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	376 chr14 rmsk exon 24009696 24010720 8164 - . gene_id "HML2_14q11.2"; transcript_id "HML2_14q11.2"; locus "HML2_14q11.2"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0099"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	377 chr14 rmsk exon 24010723 24010906 1116 - . gene_id "HML2_14q11.2"; transcript_id "HML2_14q11.2"; locus "HML2_14q11.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0099"; repClass "LTR"; repEnd "7534"; repFamily "ERVK"; repLeft "7351"; repStart "-2";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	378 chr14 rmsk exon 24011391 24015051 21036 - . gene_id "HML2_14q11.2"; transcript_id "HML2_14q11.2"; locus "HML2_14q11.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0099"; repClass "LTR"; repEnd "3656"; repFamily "ERVK"; repLeft "1"; repStart "-3880";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	379 chr14 rmsk exon 24015052 24015776 5820 - . gene_id "HML2_14q11.2"; transcript_id "HML2_14q11.2"; locus "HML2_14q11.2"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0099"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "308"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	380 ### HML2_14q32.33 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	381 chr14 rmsk gene 105673313 105676203 . + . gene_id "HML2_14q32.33"; transcript_id "HML2_14q32.33"; locus "HML2_14q32.33"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0100"; model_cov "1886"; model_pct "25.0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	382 chr14 rmsk exon 105673313 105675001 11016 + . gene_id "HML2_14q32.33"; transcript_id "HML2_14q32.33"; locus "HML2_14q32.33"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0100"; repClass "LTR"; repEnd "5462"; repFamily "ERVK"; repLeft "-2074"; repStart "3766";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	383 chr14 rmsk exon 105675007 105675106 414 + . gene_id "HML2_14q32.33"; transcript_id "HML2_14q32.33"; locus "HML2_14q32.33"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0100"; repClass "LTR"; repEnd "5686"; repFamily "ERVK"; repLeft "-1850"; repStart "5587";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	384 chr14 rmsk exon 105675105 105675196 575 + . gene_id "HML2_14q32.33"; transcript_id "HML2_14q32.33"; locus "HML2_14q32.33"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0100"; repClass "LTR"; repEnd "7532"; repFamily "ERVK"; repLeft "-4"; repStart "7441";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	385 chr14 rmsk exon 105675200 105676203 8253 + . gene_id "HML2_14q32.33"; transcript_id "HML2_14q32.33"; locus "HML2_14q32.33"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0100"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	386 ### HML2_15q25.2 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	387 chr15 rmsk gene 84160268 84163612 . + . gene_id "HML2_15q25.2"; transcript_id "HML2_15q25.2"; locus "HML2_15q25.2"; category "internal"; intModel "HERVK-int"; locid "HERVK-int_0101"; model_cov "3522"; model_pct "46.7";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	388 chr15 rmsk exon 84160268 84163612 11857 + . gene_id "HML2_15q25.2"; transcript_id "HML2_15q25.2"; locus "HML2_15q25.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0101"; repClass "LTR"; repEnd "6330"; repFamily "ERVK"; repLeft "-1206"; repStart "2808";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	389 ### HML2_16p11.2a ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	390 chr16 rmsk gene 34412057 34414804 . - . gene_id "HML2_16p11.2a"; transcript_id "HML2_16p11.2a"; locus "HML2_16p11.2a"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0104"; model_cov "1692"; model_pct "22.5";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	391 chr16 rmsk exon 34412057 34413016 8716 - . gene_id "HML2_16p11.2a"; transcript_id "HML2_16p11.2a"; locus "HML2_16p11.2a"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0104"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	392 chr16 rmsk exon 34413112 34414727 14823 - . gene_id "HML2_16p11.2a"; transcript_id "HML2_16p11.2a"; locus "HML2_16p11.2a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0104"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "5826"; repStart "-95";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	393 chr16 rmsk exon 34414727 34414804 602 - . gene_id "HML2_16p11.2a"; transcript_id "HML2_16p11.2a"; locus "HML2_16p11.2a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0104"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "5457"; repStart "-2002";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	394 ### HML2_16p11.2b ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	395 chr16 rmsk gene 34997026 34999771 . + . gene_id "HML2_16p11.2b"; transcript_id "HML2_16p11.2b"; locus "HML2_16p11.2b"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0105"; model_cov "1692"; model_pct "22.5";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	396 chr16 rmsk exon 34997026 34997103 600 + . gene_id "HML2_16p11.2b"; transcript_id "HML2_16p11.2b"; locus "HML2_16p11.2b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0105"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "-2002"; repStart "5457";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	397 chr16 rmsk exon 34997103 34998718 14851 + . gene_id "HML2_16p11.2b"; transcript_id "HML2_16p11.2b"; locus "HML2_16p11.2b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0105"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "-95"; repStart "5826";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	398 chr16 rmsk exon 34998814 34999771 9064 + . gene_id "HML2_16p11.2b"; transcript_id "HML2_16p11.2b"; locus "HML2_16p11.2b"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0105"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	399 ### HML2_17p13.1 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	400 chr17 rmsk gene 8056337 8063901 . + . gene_id "HML2_17p13.1"; transcript_id "HML2_17p13.1"; locus "HML2_17p13.1"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0107"; model_cov "6060"; model_pct "80.4";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	401 chr17 rmsk exon 8056337 8056551 407 + . gene_id "HML2_17p13.1"; transcript_id "HML2_17p13.1"; locus "HML2_17p13.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0107"; repClass "LTR"; repEnd "510"; repFamily "ERVK"; repLeft "-458"; repStart "279";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	402 chr17 rmsk exon 8057039 8057470 1171 + . gene_id "HML2_17p13.1"; transcript_id "HML2_17p13.1"; locus "HML2_17p13.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0107"; repClass "LTR"; repEnd "442"; repFamily "ERVK"; repLeft "-7094"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	403 chr17 rmsk exon 8057909 8058482 11977 + . gene_id "HML2_17p13.1"; transcript_id "HML2_17p13.1"; locus "HML2_17p13.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0107"; repClass "LTR"; repEnd "1551"; repFamily "ERVK"; repLeft "-5985"; repStart "966";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	404 chr17 rmsk exon 8058796 8061901 11977 + . gene_id "HML2_17p13.1"; transcript_id "HML2_17p13.1"; locus "HML2_17p13.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0107"; repClass "LTR"; repEnd "4676"; repFamily "ERVK"; repLeft "-2860"; repStart "1552";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	405 chr17 rmsk exon 8062292 8063901 2161 + . gene_id "HML2_17p13.1"; transcript_id "HML2_17p13.1"; locus "HML2_17p13.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0107"; repClass "LTR"; repEnd "6588"; repFamily "ERVK"; repLeft "-948"; repStart "4678";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	406 ### HML2_19p13.3 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	407 chr19 rmsk gene 385095 387637 . + . gene_id "HML2_19p13.3"; transcript_id "HML2_19p13.3"; locus "HML2_19p13.3"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0109"; model_cov "1491"; model_pct "19.8";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	408 chr19 rmsk exon 385095 386584 12032 + . gene_id "HML2_19p13.3"; transcript_id "HML2_19p13.3"; locus "HML2_19p13.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0109"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "-95"; repStart "5950";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	409 chr19 rmsk exon 386680 387637 8361 + . gene_id "HML2_19p13.3"; transcript_id "HML2_19p13.3"; locus "HML2_19p13.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0109"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	410 ### HML2_19p12a ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	411 chr19 rmsk gene 20276591 20286703 . + . gene_id "HML2_19p12a"; transcript_id "HML2_19p12a"; locus "HML2_19p12a"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0110"; model_cov "7444"; model_pct "98.8";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	412 chr19 rmsk exon 20276591 20277574 6327 + . gene_id "HML2_19p12a"; transcript_id "HML2_19p12a"; locus "HML2_19p12a"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0110"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	413 chr19 rmsk exon 20277575 20278301 5156 + . gene_id "HML2_19p12a"; transcript_id "HML2_19p12a"; locus "HML2_19p12a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0110"; repClass "LTR"; repEnd "746"; repFamily "ERVK"; repLeft "-6790"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	414 chr19 rmsk exon 20278394 20282633 41844 + . gene_id "HML2_19p12a"; transcript_id "HML2_19p12a"; locus "HML2_19p12a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0110"; repClass "LTR"; repEnd "4994"; repFamily "ERVK"; repLeft "-2542"; repStart "743";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	415 chr19 rmsk exon 20282931 20284402 41844 + . gene_id "HML2_19p12a"; transcript_id "HML2_19p12a"; locus "HML2_19p12a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0110"; repClass "LTR"; repEnd "6447"; repFamily "ERVK"; repLeft "-1089"; repStart "4995";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	416 chr19 rmsk exon 20284741 20285656 3635 + . gene_id "HML2_19p12a"; transcript_id "HML2_19p12a"; locus "HML2_19p12a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0110"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "-95"; repStart "6445";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	417 chr19 rmsk exon 20285752 20286703 5747 + . gene_id "HML2_19p12a"; transcript_id "HML2_19p12a"; locus "HML2_19p12a"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0110"; repClass "LTR"; repEnd "965"; repFamily "ERVK"; repLeft "-3"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	418 ### HML2_19p12b ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	419 chr19 rmsk gene 22575022 22581759 . + . gene_id "HML2_19p12b"; transcript_id "HML2_19p12b"; locus "HML2_19p12b"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0111"; model_cov "4920"; model_pct "65.3";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	420 chr19 rmsk exon 22575022 22575897 6995 + . gene_id "HML2_19p12b"; transcript_id "HML2_19p12b"; locus "HML2_19p12b"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0111"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "83";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	421 chr19 rmsk exon 22575898 22578608 22553 + . gene_id "HML2_19p12b"; transcript_id "HML2_19p12b"; locus "HML2_19p12b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0111"; repClass "LTR"; repEnd "2716"; repFamily "ERVK"; repLeft "-4820"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	422 chr19 rmsk exon 22578587 22579173 4900 + . gene_id "HML2_19p12b"; transcript_id "HML2_19p12b"; locus "HML2_19p12b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0111"; repClass "LTR"; repEnd "5536"; repFamily "ERVK"; repLeft "-2000"; repStart "4952";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	423 chr19 rmsk exon 22579171 22580702 8329 + . gene_id "HML2_19p12b"; transcript_id "HML2_19p12b"; locus "HML2_19p12b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0111"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "-89"; repStart "5826";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	424 chr19 rmsk exon 22580792 22581759 7910 + . gene_id "HML2_19p12b"; transcript_id "HML2_19p12b"; locus "HML2_19p12b"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0111"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	425 ### HML2_19q11 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	426 chr19 rmsk gene 27637590 27646453 . - . gene_id "HML2_19q11"; transcript_id "HML2_19q11"; locus "HML2_19q11"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0112"; model_cov "7438"; model_pct "98.7";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	427 chr19 rmsk exon 27637590 27638584 8676 - . gene_id "HML2_19q11"; transcript_id "HML2_19q11"; locus "HML2_19q11"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0112"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	428 chr19 rmsk exon 27638680 27641547 63870 - . gene_id "HML2_19q11"; transcript_id "HML2_19q11"; locus "HML2_19q11"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0112"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "4584"; repStart "-95";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	429 chr19 rmsk exon 27641861 27646453 63870 - . gene_id "HML2_19q11"; transcript_id "HML2_19q11"; locus "HML2_19q11"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0112"; repClass "LTR"; repEnd "4583"; repFamily "ERVK"; repLeft "2"; repStart "-2953";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	430 ### HML2_19q13.12a ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	431 chr19 rmsk gene 35572527 35576532 . - . gene_id "HML2_19q13.12a"; transcript_id "HML2_19q13.12a"; locus "HML2_19q13.12a"; category "internal"; intModel "HERVK-int"; locid "HERVK-int_0113"; model_cov "3681"; model_pct "48.8";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	432 chr19 rmsk exon 35572527 35575603 24890 - . gene_id "HML2_19q13.12a"; transcript_id "HML2_19q13.12a"; locus "HML2_19q13.12a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0113"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "4362"; repStart "-89";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	433 chr19 rmsk exon 35575937 35576532 4594 - . gene_id "HML2_19q13.12a"; transcript_id "HML2_19q13.12a"; locus "HML2_19q13.12a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0113"; repClass "LTR"; repEnd "2957"; repFamily "ERVK"; repLeft "2361"; repStart "-4579";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	434 ### HML2_19q13.12b ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	435 chr19 rmsk gene 37106647 37116164 . - . gene_id "HML2_19q13.12b"; transcript_id "HML2_19q13.12b"; locus "HML2_19q13.12b"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0114"; model_cov "7454"; model_pct "98.9";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	436 chr19 rmsk exon 37106647 37107600 5785 - . gene_id "HML2_19q13.12b"; transcript_id "HML2_19q13.12b"; locus "HML2_19q13.12b"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0114"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "5"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	437 chr19 rmsk exon 37107697 37114371 40845 - . gene_id "HML2_19q13.12b"; transcript_id "HML2_19q13.12b"; locus "HML2_19q13.12b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0114"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "744"; repStart "-95";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	438 chr19 rmsk exon 37114452 37115196 5138 - . gene_id "HML2_19q13.12b"; transcript_id "HML2_19q13.12b"; locus "HML2_19q13.12b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0114"; repClass "LTR"; repEnd "758"; repFamily "ERVK"; repLeft "1"; repStart "-6778";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	439 chr19 rmsk exon 37115197 37116164 6571 - . gene_id "HML2_19q13.12b"; transcript_id "HML2_19q13.12b"; locus "HML2_19q13.12b"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0114"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	440 ### HML2_19q13.41a ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	441 chr19 rmsk gene 52745023 52748339 . - . gene_id "HML2_19q13.41a"; transcript_id "HML2_19q13.41a"; locus "HML2_19q13.41a"; category "internal"; intModel "HERVK-int"; locid "HERVK-int_0115"; model_cov "5405"; model_pct "71.7";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	442 chr19 rmsk exon 52745023 52748339 26124 - . gene_id "HML2_19q13.41a"; transcript_id "HML2_19q13.41a"; locus "HML2_19q13.41a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0115"; repClass "LTR"; repEnd "6681"; repFamily "ERVK"; repLeft "1276"; repStart "-855";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	443 ### HML2_19q13.41b ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	444 chr19 rmsk gene 52748422 52750454 . - . gene_id "HML2_19q13.41b"; transcript_id "HML2_19q13.41b"; locus "HML2_19q13.41b"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0116"; model_cov "1362"; model_pct "18.1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	445 chr19 rmsk exon 52748422 52748830 26124 - . gene_id "HML2_19q13.41b"; transcript_id "HML2_19q13.41b"; locus "HML2_19q13.41b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0116"; repClass "LTR"; repEnd "6681"; repFamily "ERVK"; repLeft "6013"; repStart "-855";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	446 chr19 rmsk exon 52748809 52749491 4464 - . gene_id "HML2_19q13.41b"; transcript_id "HML2_19q13.41b"; locus "HML2_19q13.41b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0116"; repClass "LTR"; repEnd "696"; repFamily "ERVK"; repLeft "2"; repStart "-6840";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	447 chr19 rmsk exon 52749493 52750454 5671 - . gene_id "HML2_19q13.41b"; transcript_id "HML2_19q13.41b"; locus "HML2_19q13.41b"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0116"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "5"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	448 ### HML2_19q13.42 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	449 chr19 rmsk gene 53359095 53364791 . + . gene_id "HML2_19q13.42"; transcript_id "HML2_19q13.42"; locus "HML2_19q13.42"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0117"; model_cov "3616"; model_pct "48.0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	450 chr19 rmsk exon 53359095 53360013 28625 + . gene_id "HML2_19q13.42"; transcript_id "HML2_19q13.42"; locus "HML2_19q13.42"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0117"; repClass "LTR"; repEnd "4740"; repFamily "ERVK"; repLeft "-2796"; repStart "3824";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	451 chr19 rmsk exon 53361020 53363705 28625 + . gene_id "HML2_19q13.42"; transcript_id "HML2_19q13.42"; locus "HML2_19q13.42"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0117"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "-95"; repStart "4741";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	452 chr19 rmsk exon 53363801 53364791 6549 + . gene_id "HML2_19q13.42"; transcript_id "HML2_19q13.42"; locus "HML2_19q13.42"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0117"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	453 ### HML2_20q11.22 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	454 chr20 rmsk gene 34127754 34136578 . + . gene_id "HML2_20q11.22"; transcript_id "HML2_20q11.22"; locus "HML2_20q11.22"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0120"; model_cov "4785"; model_pct "63.5";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	455 chr20 rmsk exon 34127754 34128531 5764 + . gene_id "HML2_20q11.22"; transcript_id "HML2_20q11.22"; locus "HML2_20q11.22"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0120"; repClass "LTR"; repEnd "1001"; repFamily "ERVK"; repLeft "-1"; repStart "220";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	456 chr20 rmsk exon 34128532 34129076 4425 + . gene_id "HML2_20q11.22"; transcript_id "HML2_20q11.22"; locus "HML2_20q11.22"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0120"; repClass "LTR"; repEnd "556"; repFamily "ERVK"; repLeft "-6980"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	457 chr20 rmsk exon 34129382 34129595 4425 + . gene_id "HML2_20q11.22"; transcript_id "HML2_20q11.22"; locus "HML2_20q11.22"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0120"; repClass "LTR"; repEnd "758"; repFamily "ERVK"; repLeft "-6778"; repStart "557";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	458 chr20 rmsk exon 34129673 34130246 3702 + . gene_id "HML2_20q11.22"; transcript_id "HML2_20q11.22"; locus "HML2_20q11.22"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0120"; repClass "LTR"; repEnd "1325"; repFamily "ERVK"; repLeft "-6211"; repStart "743";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	459 chr20 rmsk exon 34130235 34131782 12082 + . gene_id "HML2_20q11.22"; transcript_id "HML2_20q11.22"; locus "HML2_20q11.22"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0120"; repClass "LTR"; repEnd "5190"; repFamily "ERVK"; repLeft "-2346"; repStart "3636";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	460 chr20 rmsk exon 34133703 34135592 14111 + . gene_id "HML2_20q11.22"; transcript_id "HML2_20q11.22"; locus "HML2_20q11.22"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0120"; repClass "LTR"; repEnd "7535"; repFamily "ERVK"; repLeft "-1"; repStart "5642";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	461 chr20 rmsk exon 34135594 34136578 5656 + . gene_id "HML2_20q11.22"; transcript_id "HML2_20q11.22"; locus "HML2_20q11.22"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0120"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	462 ### HML2_21q21.1 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	463 chr21 rmsk gene 18561341 18569644 . - . gene_id "HML2_21q21.1"; transcript_id "HML2_21q21.1"; locus "HML2_21q21.1"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0121"; model_cov "6986"; model_pct "92.7";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	464 chr21 rmsk exon 18561341 18561597 2222 - . gene_id "HML2_21q21.1"; transcript_id "HML2_21q21.1"; locus "HML2_21q21.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0121"; repClass "LTR"; repEnd "257"; repFamily "ERVK"; repLeft "1"; repStart "-711";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	465 chr21 rmsk exon 18561693 18563304 14060 - . gene_id "HML2_21q21.1"; transcript_id "HML2_21q21.1"; locus "HML2_21q21.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0121"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "5826"; repStart "-95";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	466 chr21 rmsk exon 18563304 18568678 45482 - . gene_id "HML2_21q21.1"; transcript_id "HML2_21q21.1"; locus "HML2_21q21.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0121"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "163"; repStart "-2002";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	467 chr21 rmsk exon 18568679 18569644 8533 - . gene_id "HML2_21q21.1"; transcript_id "HML2_21q21.1"; locus "HML2_21q21.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0121"; repClass "LTR"; repEnd "966"; repFamily "ERVK"; repLeft "1"; repStart "-2";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	468 ### HML2_22q11.21 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	469 chr22 rmsk gene 18938674 18947848 . + . gene_id "HML2_22q11.21"; transcript_id "HML2_22q11.21"; locus "HML2_22q11.21"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0122"; model_cov "7154"; model_pct "94.9";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	470 chr22 rmsk exon 18938674 18939641 9026 + . gene_id "HML2_22q11.21"; transcript_id "HML2_22q11.21"; locus "HML2_22q11.21"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0122"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	471 chr22 rmsk exon 18939642 18945174 43432 + . gene_id "HML2_22q11.21"; transcript_id "HML2_22q11.21"; locus "HML2_22q11.21"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0122"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "-2002"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	472 chr22 rmsk exon 18945174 18946795 13254 + . gene_id "HML2_22q11.21"; transcript_id "HML2_22q11.21"; locus "HML2_22q11.21"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0122"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "-89"; repStart "5826";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	473 chr22 rmsk exon 18946885 18947848 8954 + . gene_id "HML2_22q11.21"; transcript_id "HML2_22q11.21"; locus "HML2_22q11.21"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0122"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	474 ### HML2_22q11.23 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	475 chr22 rmsk gene 23536062 23546900 . + . gene_id "HML2_22q11.23"; transcript_id "HML2_22q11.23"; locus "HML2_22q11.23"; category "unknown"; intModel "HERVK-int"; locid "HERVK-int_0123"; model_cov "7693"; model_pct "100.0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	476 chr22 rmsk exon 23536062 23537026 6743 + . gene_id "HML2_22q11.23"; transcript_id "HML2_22q11.23"; locus "HML2_22q11.23"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0123"; repClass "LTR"; repEnd "964"; repFamily "ERVK"; repLeft "-4"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	477 chr22 rmsk exon 23537028 23537189 1108 + . gene_id "HML2_22q11.23"; transcript_id "HML2_22q11.23"; locus "HML2_22q11.23"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0123"; repClass "LTR"; repEnd "163"; repFamily "ERVK"; repLeft "-7373"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	478 chr22 rmsk exon 23537190 23537250 437 + . gene_id "HML2_22q11.23"; transcript_id "HML2_22q11.23"; locus "HML2_22q11.23"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0123"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "942";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	479 chr22 rmsk exon 23537740 23538729 7295 + . gene_id "HML2_22q11.23"; transcript_id "HML2_22q11.23"; locus "HML2_22q11.23"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0123"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	480 chr22 rmsk exon 23538730 23546008 30409 + . gene_id "HML2_22q11.23"; transcript_id "HML2_22q11.23"; locus "HML2_22q11.23"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0123"; repClass "LTR"; repEnd "7267"; repFamily "ERVK"; repLeft "-269"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	481 chr22 rmsk exon 23546306 23546576 30409 + . gene_id "HML2_22q11.23"; transcript_id "HML2_22q11.23"; locus "HML2_22q11.23"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0123"; repClass "LTR"; repEnd "7533"; repFamily "ERVK"; repLeft "-3"; repStart "7268";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	482 chr22 rmsk exon 23546582 23546900 2050 + . gene_id "HML2_22q11.23"; transcript_id "HML2_22q11.23"; locus "HML2_22q11.23"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0123"; repClass "LTR"; repEnd "331"; repFamily "ERVK"; repLeft "-671"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	483 ### HML2_Xq11.1 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	484 chrX rmsk gene 62740079 62742584 . + . gene_id "HML2_Xq11.1"; transcript_id "HML2_Xq11.1"; locus "HML2_Xq11.1"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0125"; model_cov "2423"; model_pct "32.2";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	485 chrX rmsk exon 62740079 62740554 2893 + . gene_id "HML2_Xq11.1"; transcript_id "HML2_Xq11.1"; locus "HML2_Xq11.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0125"; repClass "LTR"; repEnd "5462"; repFamily "ERVK"; repLeft "-2074"; repStart "4986";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	486 chrX rmsk exon 62740560 62742508 10851 + . gene_id "HML2_Xq11.1"; transcript_id "HML2_Xq11.1"; locus "HML2_Xq11.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0125"; repClass "LTR"; repEnd "7534"; repFamily "ERVK"; repLeft "-2"; repStart "5587";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	487 chrX rmsk exon 62742511 62742584 630 + . gene_id "HML2_Xq11.1"; transcript_id "HML2_Xq11.1"; locus "HML2_Xq11.1"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0125"; repClass "LTR"; repEnd "74"; repFamily "ERVK"; repLeft "-928"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	488 ### HML2_Xq12 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	489 chrX rmsk gene 66464290 66466342 . - . gene_id "HML2_Xq12"; transcript_id "HML2_Xq12"; locus "HML2_Xq12"; category "internal"; intModel "HERVK-int"; locid "HERVK-int_0126"; model_cov "2058"; model_pct "27.3";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	490 chrX rmsk exon 66464290 66466342 13660 - . gene_id "HML2_Xq12"; transcript_id "HML2_Xq12"; locus "HML2_Xq12"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0126"; repClass "LTR"; repEnd "5139"; repFamily "ERVK"; repLeft "3081"; repStart "-2397";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	491 ### HML2_Xq28a ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	492 chrX rmsk gene 154588662 154591282 . + . gene_id "HML2_Xq28a"; transcript_id "HML2_Xq28a"; locus "HML2_Xq28a"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0127"; model_cov "805"; model_pct "10.7";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	493 chrX rmsk exon 154588662 154589649 8253 + . gene_id "HML2_Xq28a"; transcript_id "HML2_Xq28a"; locus "HML2_Xq28a"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0127"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	494 chrX rmsk exon 154589650 154591282 4975 + . gene_id "HML2_Xq28a"; transcript_id "HML2_Xq28a"; locus "HML2_Xq28a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0127"; repClass "LTR"; repEnd "3812"; repFamily "ERVK"; repLeft "-3724"; repStart "3007";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	495 ### HML2_Xq28b ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	496 chrX rmsk gene 154608423 154615762 . - . gene_id "HML2_Xq28b"; transcript_id "HML2_Xq28b"; locus "HML2_Xq28b"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0128"; model_cov "7445"; model_pct "98.8";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	497 chrX rmsk exon 154608423 154609415 8174 - . gene_id "HML2_Xq28b"; transcript_id "HML2_Xq28b"; locus "HML2_Xq28b"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0128"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	498 chrX rmsk exon 154609505 154614774 22434 - . gene_id "HML2_Xq28b"; transcript_id "HML2_Xq28b"; locus "HML2_Xq28b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0128"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "2"; repStart "-89";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	499 chrX rmsk exon 154614775 154615762 8243 - . gene_id "HML2_Xq28b"; transcript_id "HML2_Xq28b"; locus "HML2_Xq28b"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0128"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	500 ### HML2_Yp11.2 ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	501 chrY rmsk gene 6958400 6965343 . - . gene_id "HML2_Yp11.2"; transcript_id "HML2_Yp11.2"; locus "HML2_Yp11.2"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0129"; model_cov "5908"; model_pct "78.4";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	502 chrY rmsk exon 6958400 6959413 7973 - . gene_id "HML2_Yp11.2"; transcript_id "HML2_Yp11.2"; locus "HML2_Yp11.2"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0129"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	503 chrY rmsk exon 6959419 6963041 24065 - . gene_id "HML2_Yp11.2"; transcript_id "HML2_Yp11.2"; locus "HML2_Yp11.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0129"; repClass "LTR"; repEnd "7531"; repFamily "ERVK"; repLeft "3912"; repStart "-5";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	504 chrY rmsk exon 6963034 6965343 11787 - . gene_id "HML2_Yp11.2"; transcript_id "HML2_Yp11.2"; locus "HML2_Yp11.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0129"; repClass "LTR"; repEnd "2820"; repFamily "ERVK"; repLeft "531"; repStart "-4716";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	505 ### HML2_Yq11.23a ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	506 chrY rmsk gene 24251690 24254888 . - . gene_id "HML2_Yq11.23a"; transcript_id "HML2_Yq11.23a"; locus "HML2_Yq11.23a"; category "internal"; intModel "HERVK-int"; locid "HERVK-int_0130"; model_cov "3385"; model_pct "44.9";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	507 chrY rmsk exon 24251690 24254888 11436 - . gene_id "HML2_Yq11.23a"; transcript_id "HML2_Yq11.23a"; locus "HML2_Yq11.23a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0130"; repClass "LTR"; repEnd "6193"; repFamily "ERVK"; repLeft "2808"; repStart "-1343";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	508 ### HML2_Yq11.23b ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	509 chrY rmsk gene 25415255 25418454 . + . gene_id "HML2_Yq11.23b"; transcript_id "HML2_Yq11.23b"; locus "HML2_Yq11.23b"; category "internal"; intModel "HERVK-int"; locid "HERVK-int_0131"; model_cov "3385"; model_pct "44.9";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	510 chrY rmsk exon 25415255 25418454 11433 + . gene_id "HML2_Yq11.23b"; transcript_id "HML2_Yq11.23b"; locus "HML2_Yq11.23b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0131"; repClass "LTR"; repEnd "6193"; repFamily "ERVK"; repLeft "-1343"; repStart "2808";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	511 ### HML2_1_KI270766v1_alt ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	512 chr1_KI270766v1_alt rmsk gene 150436 159977 . + . gene_id "HML2_1_KI270766v1_alt"; transcript_id "HML2_1_KI270766v1_alt"; locus "HML2_1_KI270766v1_alt"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0132"; model_cov "7448"; model_pct "98.8";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	513 chr1_KI270766v1_alt rmsk exon 150436 151426 7851 + . gene_id "HML2_1_KI270766v1_alt"; transcript_id "HML2_1_KI270766v1_alt"; locus "HML2_1_KI270766v1_alt"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0132"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	514 chr1_KI270766v1_alt rmsk exon 151428 152160 4512 + . gene_id "HML2_1_KI270766v1_alt"; transcript_id "HML2_1_KI270766v1_alt"; locus "HML2_1_KI270766v1_alt"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0132"; repClass "LTR"; repEnd "746"; repFamily "ERVK"; repLeft "-6790"; repStart "2";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	515 chr1_KI270766v1_alt rmsk exon 152253 158890 20253 + . gene_id "HML2_1_KI270766v1_alt"; transcript_id "HML2_1_KI270766v1_alt"; locus "HML2_1_KI270766v1_alt"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0132"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "-89"; repStart "743";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	516 chr1_KI270766v1_alt rmsk exon 158980 159977 8041 + . gene_id "HML2_1_KI270766v1_alt"; transcript_id "HML2_1_KI270766v1_alt"; locus "HML2_1_KI270766v1_alt"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0132"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	517 ### HML2_6_GL000251v2_alt ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	518 chr6_GL000251v2_alt rmsk gene 172412 182779 . + . gene_id "HML2_6_GL000251v2_alt"; transcript_id "HML2_6_GL000251v2_alt"; locus "HML2_6_GL000251v2_alt"; category "unknown"; intModel "HERVK-int"; locid "HERVK-int_0134"; model_cov "7558"; model_pct "100.0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	519 chr6_GL000251v2_alt rmsk exon 172412 173229 3560 + . gene_id "HML2_6_GL000251v2_alt"; transcript_id "HML2_6_GL000251v2_alt"; locus "HML2_6_GL000251v2_alt"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0134"; repClass "LTR"; repEnd "965"; repFamily "ERVK"; repLeft "-3"; repStart "189";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	520 chr6_GL000251v2_alt rmsk exon 173233 173967 4885 + . gene_id "HML2_6_GL000251v2_alt"; transcript_id "HML2_6_GL000251v2_alt"; locus "HML2_6_GL000251v2_alt"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0134"; repClass "LTR"; repEnd "746"; repFamily "ERVK"; repLeft "-6790"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	521 chr6_GL000251v2_alt rmsk exon 174045 177202 50015 + . gene_id "HML2_6_GL000251v2_alt"; transcript_id "HML2_6_GL000251v2_alt"; locus "HML2_6_GL000251v2_alt"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0134"; repClass "LTR"; repEnd "3909"; repFamily "ERVK"; repLeft "-3627"; repStart "722";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	522 chr6_GL000251v2_alt rmsk exon 177203 178177 5650 + . gene_id "HML2_6_GL000251v2_alt"; transcript_id "HML2_6_GL000251v2_alt"; locus "HML2_6_GL000251v2_alt"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0134"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	523 chr6_GL000251v2_alt rmsk exon 178178 181831 50015 + . gene_id "HML2_6_GL000251v2_alt"; transcript_id "HML2_6_GL000251v2_alt"; locus "HML2_6_GL000251v2_alt"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0134"; repClass "LTR"; repEnd "7536"; repFamily "ERVK"; repLeft "0"; repStart "3910";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	524 chr6_GL000251v2_alt rmsk exon 181832 182779 5423 + . gene_id "HML2_6_GL000251v2_alt"; transcript_id "HML2_6_GL000251v2_alt"; locus "HML2_6_GL000251v2_alt"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0134"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	525 ### HML2_8_KI270813v1_alt(a) ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	526 chr8_KI270813v1_alt rmsk gene 180978 185867 . - . gene_id "HML2_8_KI270813v1_alt(a)"; transcript_id "HML2_8_KI270813v1_alt(a)"; locus "HML2_8_KI270813v1_alt(a)"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0136"; model_cov "3848"; model_pct "51.1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	527 chr8_KI270813v1_alt rmsk exon 180978 181945 8834 - . gene_id "HML2_8_KI270813v1_alt(a)"; transcript_id "HML2_8_KI270813v1_alt(a)"; locus "HML2_8_KI270813v1_alt(a)"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0136"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	528 chr8_KI270813v1_alt rmsk exon 182041 185867 63496 - . gene_id "HML2_8_KI270813v1_alt(a)"; transcript_id "HML2_8_KI270813v1_alt(a)"; locus "HML2_8_KI270813v1_alt(a)"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0136"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "3593"; repStart "-95";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	529 ### HML2_8_KI270813v1_alt(b) ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	530 chr8_KI270813v1_alt rmsk gene 185912 190440 . - . gene_id "HML2_8_KI270813v1_alt(b)"; transcript_id "HML2_8_KI270813v1_alt(b)"; locus "HML2_8_KI270813v1_alt(b)"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0137"; model_cov "3591"; model_pct "47.7";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	531 chr8_KI270813v1_alt rmsk exon 185912 189480 63496 - . gene_id "HML2_8_KI270813v1_alt(b)"; transcript_id "HML2_8_KI270813v1_alt(b)"; locus "HML2_8_KI270813v1_alt(b)"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0137"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "3850"; repStart "-95";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	532 chr8_KI270813v1_alt rmsk exon 189481 190440 8730 - . gene_id "HML2_8_KI270813v1_alt(b)"; transcript_id "HML2_8_KI270813v1_alt(b)"; locus "HML2_8_KI270813v1_alt(b)"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0137"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	533 ### HML2_14_KI270846v1_alt ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	534 chr14_KI270846v1_alt rmsk gene 141082 143972 . + . gene_id "HML2_14_KI270846v1_alt"; transcript_id "HML2_14_KI270846v1_alt"; locus "HML2_14_KI270846v1_alt"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0138"; model_cov "1886"; model_pct "25.0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	535 chr14_KI270846v1_alt rmsk exon 141082 142770 11016 + . gene_id "HML2_14_KI270846v1_alt"; transcript_id "HML2_14_KI270846v1_alt"; locus "HML2_14_KI270846v1_alt"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0138"; repClass "LTR"; repEnd "5462"; repFamily "ERVK"; repLeft "-2074"; repStart "3766";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	536 chr14_KI270846v1_alt rmsk exon 142776 142875 414 + . gene_id "HML2_14_KI270846v1_alt"; transcript_id "HML2_14_KI270846v1_alt"; locus "HML2_14_KI270846v1_alt"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0138"; repClass "LTR"; repEnd "5686"; repFamily "ERVK"; repLeft "-1850"; repStart "5587";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	537 chr14_KI270846v1_alt rmsk exon 142874 142965 575 + . gene_id "HML2_14_KI270846v1_alt"; transcript_id "HML2_14_KI270846v1_alt"; locus "HML2_14_KI270846v1_alt"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0138"; repClass "LTR"; repEnd "7532"; repFamily "ERVK"; repLeft "-4"; repStart "7441";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	538 chr14_KI270846v1_alt rmsk exon 142969 143972 8253 + . gene_id "HML2_14_KI270846v1_alt"; transcript_id "HML2_14_KI270846v1_alt"; locus "HML2_14_KI270846v1_alt"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0138"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	539 ### HML2_19_GL383575v2_alt ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	540 chr19_GL383575v2_alt rmsk gene 10454 19925 . - . gene_id "HML2_19_GL383575v2_alt"; transcript_id "HML2_19_GL383575v2_alt"; locus "HML2_19_GL383575v2_alt"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0139"; model_cov "7446"; model_pct "98.8";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	541 chr19_GL383575v2_alt rmsk exon 10454 11421 8772 - . gene_id "HML2_19_GL383575v2_alt"; transcript_id "HML2_19_GL383575v2_alt"; locus "HML2_19_GL383575v2_alt"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0139"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	542 chr19_GL383575v2_alt rmsk exon 11511 18957 64100 - . gene_id "HML2_19_GL383575v2_alt"; transcript_id "HML2_19_GL383575v2_alt"; locus "HML2_19_GL383575v2_alt"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0139"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "1"; repStart "-89";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	543 chr19_GL383575v2_alt rmsk exon 18958 19925 8778 - . gene_id "HML2_19_GL383575v2_alt"; transcript_id "HML2_19_GL383575v2_alt"; locus "HML2_19_GL383575v2_alt"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0139"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	544 ### HML2_19_GL383576v1_alt ###
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	545 chr19_GL383576v1_alt rmsk gene 69114 77314 . + . gene_id "HML2_19_GL383576v1_alt"; transcript_id "HML2_19_GL383576v1_alt"; locus "HML2_19_GL383576v1_alt"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0140"; model_cov "7148"; model_pct "94.9";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	546 chr19_GL383576v1_alt rmsk exon 69114 74636 50491 + . gene_id "HML2_19_GL383576v1_alt"; transcript_id "HML2_19_GL383576v1_alt"; locus "HML2_19_GL383576v1_alt"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0140"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "-2002"; repStart "1";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	547 chr19_GL383576v1_alt rmsk exon 74636 76251 14968 + . gene_id "HML2_19_GL383576v1_alt"; transcript_id "HML2_19_GL383576v1_alt"; locus "HML2_19_GL383576v1_alt"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0140"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "-95"; repStart "5826";
66ff74923224 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463" iuc parents: diff changeset	548 chr19_GL383576v1_alt rmsk exon 76347 77314 9262 + . gene_id "HML2_19_GL383576v1_alt"; transcript_id "HML2_19_GL383576v1_alt"; locus "HML2_19_GL383576v1_alt"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0140"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1";

Mercurial > repos > iuc > telescope_assign

annotate test-data/telescope-in1.gtf @ 0:66ff74923224 draft