--- a/test-data/count/exp_diff/input.matrix.wt_37_vs_wt_ph8.edgeR.DE_results	Sun Dec 19 16:25:47 2021 +0000
+++ b/test-data/count/exp_diff/input.matrix.wt_37_vs_wt_ph8.edgeR.DE_results	Tue Apr 11 19:57:45 2023 +0000
@@ -1,39 +1,39 @@
 sampleA	sampleB	logFC	logCPM	PValue	FDR
-TR131|c0_g1_i1	wt_37	wt_ph8	-5.83867709149149	16.0447742820606	3.67956255674e-64	1.3982337715612e-62
-TR3091|c0_g1_i1	wt_37	wt_ph8	-4.35104356420213	13.9337836495047	7.47918124727105e-59	1.4210444369815e-57
-TR4277|c0_g1_i1	wt_37	wt_ph8	4.51249642920563	17.4585638169146	1.30305812944242e-53	1.65054029729373e-52
-TR5075|c0_g1_i1	wt_37	wt_ph8	-3.18286810352713	12.8084040893566	8.25600206225396e-24	7.84320195914126e-23
-TR2107|c1_g1_i1	wt_37	wt_ph8	4.48477961203985	11.2510359028096	1.80754966502889e-22	1.37373774542196e-21
-TR2779|c0_g1_i1	wt_37	wt_ph8	-2.75442228103487	15.7797198210508	8.23352696880425e-15	5.21456708024269e-14
-TR1891|c0_g1_i1	wt_37	wt_ph8	-1.85607282303223	14.4424161372431	4.82341414399837e-12	2.61842482102769e-11
-TR4761|c0_g1_i1	wt_37	wt_ph8	2.05815692521639	16.4916266891202	6.53530817860542e-12	3.10427138483757e-11
-TR1479|c0_g1_i1	wt_37	wt_ph8	-1.43256512308186	14.3771181295432	1.13197856555697e-09	4.77946505457389e-09
-TR2122|c0_g2_i2	wt_37	wt_ph8	-1.63807722824331	14.4300672231344	2.54380104198531e-09	9.66644395954419e-09
-TR24|c0_g1_i1	wt_37	wt_ph8	-1.56169455062581	13.613754007054	1.01137959952142e-08	3.49385679834671e-08
-TR2487|c0_g1_i1	wt_37	wt_ph8	-1.52157644373511	15.8810635663776	2.37540305111961e-07	7.52210966187877e-07
-TR4084|c0_g1_i1	wt_37	wt_ph8	-0.991060679215133	13.5661427311877	4.21767858359174e-07	1.23285989366528e-06
-TR1678|c0_g1_i1	wt_37	wt_ph8	-3.62458577193226	9.02581543875671	1.43837087677047e-05	3.90414952266271e-05
-TR127|c1_g1_i1	wt_37	wt_ph8	2.90111481011278	9.73961125813442	2.21824302925283e-05	5.61954900744051e-05
-TR1894|c2_g1_i1	wt_37	wt_ph8	2.85359093751189	9.70265145133598	3.82707393478771e-05	9.08930059512081e-05
-TR5055|c0_g2_i1	wt_37	wt_ph8	1.8545312748531	10.5508309427169	0.000561739096452478	0.0012556520979526
-TR2090|c0_g1_i1	wt_37	wt_ph8	-5.85461418677349	8.72713197001274	0.000625444406369261	0.00132038263566844
-TR4859|c0_g1_i1	wt_37	wt_ph8	2.31469487039419	9.12085022188999	0.00236706272759891	0.00473412545519782
-TR1492|c0_g1_i2	wt_37	wt_ph8	0.847097868783511	16.8160271449712	0.00265383515294934	0.00504228679060374
-TR3638|c0_g1_i1	wt_37	wt_ph8	0.812580107843708	15.3469752226999	0.00403607816905259	0.00730337954399992
-TR3807|c0_g1_i1	wt_37	wt_ph8	2.92018331334326	8.37863764275674	0.0119536481076316	0.0206472103677272
-TR1449|c0_g1_i1	wt_37	wt_ph8	0.576747771663695	13.7363876885022	0.0130185393324759	0.0215088910710471
-TR1982|c2_g1_i1	wt_37	wt_ph8	-1.11743546508384	9.86122459596308	0.024471659211255	0.0382656346855499
-TR2672|c0_g1_i1	wt_37	wt_ph8	1.09825528852042	10.4080374441724	0.025174759661546	0.0382656346855499
-TR3249|c0_g1_i1	wt_37	wt_ph8	-2.00776956676821	8.66772655901099	0.0275363688345113	0.0402454621427472
-TR5212|c0_g1_i1	wt_37	wt_ph8	-0.582012857882519	12.8600915149255	0.0318599127004672	0.0448398771339909
-TR4163|c0_g1_i1	wt_37	wt_ph8	0.585935901552979	14.6858409740027	0.0333717283041774	0.0452902026985264
-TR2844|c0_g1_i1	wt_37	wt_ph8	-0.484938504762758	14.0537413817093	0.0410237194953782	0.0537552186491163
-TR1859|c3_g1_i1	wt_37	wt_ph8	-2.64648031785777	8.0811923384908	0.0677782555815868	0.0858524570700099
-TR2278|c0_g1_i1	wt_37	wt_ph8	0.462893051132405	15.2205527935145	0.0990317248813937	0.121393727273966
-TR3854|c0_g1_i1	wt_37	wt_ph8	-0.45233145936844	17.3656486469949	0.115995274036176	0.13774438791796
-TR3788|c0_g1_i1	wt_37	wt_ph8	-0.512277745155381	11.1125640718165	0.129462204245195	0.149077689736891
-TR939|c0_g1_i1	wt_37	wt_ph8	-0.343195417039388	13.0829763503018	0.196684960972624	0.219824368145874
-TR1837|c2_g1_i1	wt_37	wt_ph8	-2.21076601464763	7.9226544260522	0.248563909756302	0.269869387735413
-TR1122|c0_g1_i1	wt_37	wt_ph8	0.860567840252952	7.98418712954456	0.72405804618472	0.764283493194982
-TR2011|c5_g1_i1	wt_37	wt_ph8	0.075980865610854	9.27931055760989	0.901508002533997	0.925873083683564
-TR2182|c3_g2_i6	wt_37	wt_ph8	0.147124070779728	8.45393312498213	1	1
+TR131|c0_g1_i1	wt_37	wt_ph8	-5.84041934032622	16.0447738584896	2.64843647765193e-68	1.00640586150773e-66
+TR4277|c0_g1_i1	wt_37	wt_ph8	4.51251378503982	17.458563860849	7.87456958793119e-51	1.49616822170693e-49
+TR3091|c0_g1_i1	wt_37	wt_ph8	-4.33866462808288	13.9337820695818	2.36438873567113e-40	2.99489239851676e-39
+TR5075|c0_g1_i1	wt_37	wt_ph8	-3.18184004176717	12.8084012906916	4.32969562983877e-23	4.11321084834683e-22
+TR2779|c0_g1_i1	wt_37	wt_ph8	-2.76000097034818	15.7797193517192	7.02929665566158e-23	5.3422654583028e-22
+TR2107|c1_g1_i1	wt_37	wt_ph8	4.48695752844007	11.251039090086	2.85694633276303e-20	1.80939934408325e-19
+TR4761|c0_g1_i1	wt_37	wt_ph8	2.0579616780365	16.4916266757798	1.87157355154512e-14	1.01599707083878e-13
+TR1891|c0_g1_i1	wt_37	wt_ph8	-1.85558303182422	14.4424152648443	1.3549609315801e-11	6.43606442500547e-11
+TR2122|c0_g2_i2	wt_37	wt_ph8	-1.63829756449903	14.4300663727902	1.82580551883595e-09	7.70895663508514e-09
+TR2487|c0_g1_i1	wt_37	wt_ph8	-1.52256386898699	15.8810632159828	1.00076368146348e-08	3.80290198956123e-08
+TR24|c0_g1_i1	wt_37	wt_ph8	-1.56069263322937	13.6137525216945	2.0641918619938e-08	7.13084461416041e-08
+TR1479|c0_g1_i1	wt_37	wt_ph8	-1.43017641947686	14.3771173732228	1.25129096758536e-07	3.96242139735364e-07
+TR127|c1_g1_i1	wt_37	wt_ph8	2.89378247411933	9.73961391632741	1.77483025831263e-06	5.18796537045229e-06
+TR1894|c2_g1_i1	wt_37	wt_ph8	2.84455594181396	9.70265363738305	3.80774768997069e-06	1.03353151584919e-05
+TR2090|c0_g1_i1	wt_37	wt_ph8	-5.84865009980137	8.72712853989006	7.1017296397318e-06	1.79910484206539e-05
+TR5055|c0_g2_i1	wt_37	wt_ph8	1.82971910256975	10.5508300754678	1.05374662314498e-05	2.50264822996933e-05
+TR1678|c0_g1_i1	wt_37	wt_ph8	-3.62297933758159	9.02581162405914	1.85386281004691e-05	4.1439286342225e-05
+TR4084|c0_g1_i1	wt_37	wt_ph8	-0.989047817791601	13.5661419902701	0.000266385708775898	0.000562369829638008
+TR1492|c0_g1_i2	wt_37	wt_ph8	0.846946606328173	16.816027085378	0.00111844437365923	0.00223688874731846
+TR4859|c0_g1_i1	wt_37	wt_ph8	2.31297110196869	9.12085217163192	0.00169405620519211	0.00321870678986502
+TR3638|c0_g1_i1	wt_37	wt_ph8	0.812150684296427	15.3469750288171	0.00195862604708162	0.0035441804661477
+TR3807|c0_g1_i1	wt_37	wt_ph8	2.91885642490418	8.37863917696072	0.00889981242694952	0.0153724032829128
+TR2672|c0_g1_i1	wt_37	wt_ph8	1.09015105073495	10.4080380170218	0.0113968048117331	0.0188295036019939
+TR3249|c0_g1_i1	wt_37	wt_ph8	-2.00248923602224	8.66772464596919	0.012175839230813	0.0192784121154539
+TR1982|c2_g1_i1	wt_37	wt_ph8	-1.11692146946545	9.86122186982139	0.0254732500230551	0.0380540735981811
+TR4163|c0_g1_i1	wt_37	wt_ph8	0.585493536631111	14.6858406628863	0.0260369977250713	0.0380540735981811
+TR1449|c0_g1_i1	wt_37	wt_ph8	0.579397661518319	13.7363873307119	0.0302958377959148	0.0426385865275838
+TR5212|c0_g1_i1	wt_37	wt_ph8	-0.580254103150409	12.8600901680646	0.0404390149604427	0.054881520303458
+TR1859|c3_g1_i1	wt_37	wt_ph8	-2.66753302288967	8.08119047667972	0.0460728591095077	0.0603713326262514
+TR2844|c0_g1_i1	wt_37	wt_ph8	-0.482774572490911	14.0537407448782	0.0727694305006538	0.0921746119674948
+TR2278|c0_g1_i1	wt_37	wt_ph8	0.462415658712107	15.2205525577595	0.0767838146787893	0.0941220954127095
+TR3854|c0_g1_i1	wt_37	wt_ph8	-0.452545415035422	17.3656485551494	0.080313088818483	0.0953717929719486
+TR3788|c0_g1_i1	wt_37	wt_ph8	-0.50904223856954	11.112562271961	0.177982574706024	0.204949631479664
+TR1837|c2_g1_i1	wt_37	wt_ph8	-2.21377059210539	7.92265348832559	0.23010293924542	0.251432947894972
+TR939|c0_g1_i1	wt_37	wt_ph8	-0.340377492720978	13.0829751506545	0.231582978324316	0.251432947894972
+TR1122|c0_g1_i1	wt_37	wt_ph8	0.90037398238529	7.98418851125693	0.694931998823269	0.733539332091228
+TR2182|c3_g2_i6	wt_37	wt_ph8	0.125015386728524	8.45393207220823	0.999999999999999	1
+TR2011|c5_g1_i1	wt_37	wt_ph8	0.0588147623425484	9.27930953984144	1	1