Mercurial > repos > iuc > trinity_contig_exn50_statistic

annotate macros.xml @ 3:bc4e467da875 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 7f726b691ead726864f1b67230cb5d58e16b5f58
author iuc
date Fri, 15 Dec 2017 07:57:13 -0500
parents 570f2b1f3cd9
children afa3a9786339
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1e8a2c87461a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit ed037d83415937b11a45a4611584e71e99ad1da0
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1 <?xml version="1.0"?>
1e8a2c87461a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit ed037d83415937b11a45a4611584e71e99ad1da0
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2 <macros>
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3 <xml name="requirements">
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4 <requirements>
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5 <requirement type="package" version="2.4.0">trinity</requirement>
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6 <yield/>
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7 </requirements>
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8 </xml>
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9
1
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10 <token name="@WRAPPER_VERSION@">2.4.0</token>
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12 <token name="@COMMAND_PAIRED_STRAND_JACCARD@">
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13 #if $inputs.strand.is_strand_specific:
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14 --SS_lib_type $inputs.strand.library_type
bc4e467da875 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 7f726b691ead726864f1b67230cb5d58e16b5f58
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15 #end if
bc4e467da875 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 7f726b691ead726864f1b67230cb5d58e16b5f58
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17 $inputs.jaccard_clip
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18 </token>
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20 <xml name="input_paired_strand_jaccard">
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21 <conditional name="strand">
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22 <param name="is_strand_specific" type="boolean" checked="false" label="Strand specific data"/>
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23 <when value="false" />
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24 <when value="true">
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25 <param name="library_type" argument="--SS_lib_type" type="select" label="Strand-specific library type">
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26 <option value="FR">Forward-Reverse</option>
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27 <option value="RF">Reverse-Forward</option>
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28 </param>
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29 </when>
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30 </conditional>
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31 <param name="jaccard_clip" argument="--jaccard_clip" type="boolean" truevalue="--jaccard_clip" falsevalue="" checked="false" label="Jaccard Clip options" help="Set if you expect high gene density with UTR overlap"/>
bc4e467da875 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 7f726b691ead726864f1b67230cb5d58e16b5f58
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32 </xml>
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33
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34 <xml name="citation">
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35 <citations>
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36 <citation type="doi">10.1038/nbt.1883</citation>
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37 </citations>
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38 </xml>
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39 </macros>