Mercurial > repos > iuc > trycycler_consensus

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9da13f57f93e69fd463f6245af45674fe011b861
author iuc
date Wed, 06 Nov 2024 13:32:06 +0000
parents f31d376ce725
children
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93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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1 <macros>
7
f31d376ce725 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit e9abd8b86133e530d0395d85bca320a1af27a9b6
iuc
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2 <token name="@TOOL_VERSION@">0.5.5</token>
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93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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3 <token name="@PIPELINE@">
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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4 **Trycycler pipeline**
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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5
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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6 ::
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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8 Trycycler subsample: make maximally-independent read subsets of an appropriate depth.
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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9 ⬇
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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10 Trycycler cluster: carries out complete-linkage clustering of all contig sequences.
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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11 ⬇
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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12 Trycycler reconcile/msa: reconcile the contigs within each cluster and perform a multiple sequence alignment.
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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13 ⬇
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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14 Trycycler partition: split the reads between the different clusters.
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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15 ⬇
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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16 Trycycler consensus: generate a consensus contig sequence for each cluster.
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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17
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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18 </token>
8
a7ed21de23fe planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9da13f57f93e69fd463f6245af45674fe011b861
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19 <xml name="biotools">
a7ed21de23fe planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9da13f57f93e69fd463f6245af45674fe011b861
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20 <xrefs>
a7ed21de23fe planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9da13f57f93e69fd463f6245af45674fe011b861
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21 <xref type="bio.tools">trycycler</xref>
a7ed21de23fe planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9da13f57f93e69fd463f6245af45674fe011b861
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22 </xrefs>
a7ed21de23fe planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9da13f57f93e69fd463f6245af45674fe011b861
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23 </xml>
0
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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24 <xml name="edam_ontology">
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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25 <edam_topics>
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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26 <edam_topic>topic_0196</edam_topic>
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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27 </edam_topics>
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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28 <edam_operations>
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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29 <edam_operation>operation_0525</edam_operation>
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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30 </edam_operations>
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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31 </xml>
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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32 <xml name="requirements">
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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33 <requirements>
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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34 <requirement type="package" version="@TOOL_VERSION@">trycycler</requirement>
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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35 </requirements>
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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36 </xml>
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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37 <xml name="citations">
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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38 <citations>
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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39 <citation type="bibtex">
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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40 @misc{githubTrycycler,
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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41 author = {Ryan, Wick},
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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42 year = {2020},
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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43 title = {Trycycler},
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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44 publisher = {GitHub},
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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45 journal = {GitHub repository},
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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46 url = {https://github.com/rrwick/Trycycler},
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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47 }
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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48 </citation>
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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49 </citations>
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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50 </xml>
93c6a7423090 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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51 </macros>