Mercurial > repos > iuc > trycycler_reconcile_msa

changeset 3:b5e35a2ca4f3 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit ab252d84772e94d522b4d436a11dc31b3a4d6712"
author iuc
date Tue, 19 Oct 2021 08:31:08 +0000
parents 937ea677d437
children 59bd28f6265d
files macros.xml trycycler_reconcile_msa.xml
diffstat 2 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Mon Oct 04 16:20:58 2021 +0000
+++ b/macros.xml	Tue Oct 19 08:31:08 2021 +0000
@@ -1,5 +1,5 @@
 <macros>
-    <token name="@TOOL_VERSION@">0.5.0</token>
+    <token name="@TOOL_VERSION@">0.5.1</token>
     <token name="@PIPELINE@">                                                                                
 **Trycycler pipeline**                                                                                  
                                                                                                         
--- a/trycycler_reconcile_msa.xml	Mon Oct 04 16:20:58 2021 +0000
+++ b/trycycler_reconcile_msa.xml	Tue Oct 19 08:31:08 2021 +0000
@@ -52,7 +52,7 @@
         </section>
         <section name="final_check" title="Reconcile final check" expanded="true">
             <param argument="--min_identity" type="integer" min="70" max="100" value="98" label="Min global alignment percentage identity" help="If any of the sequences have a pairwise global alignment percent identity of less than this (default = 98), then the contigs will fail the final check." />
-            <param argument="--max_indel_size" type="integer" min="100" max="400" value="250" label="Max alignment indel size" help="If any of the sequences have a pairwise alignment indel size of more than this (default = 250), then the contigs will fail the final check." />
+            <param argument="--max_indel_size" type="integer" min="0" max="10000" value="1000" label="Max alignment indel size" help="If any of the sequences have a pairwise alignment indel size of more than this (default = 1000), then the contigs will fail the final check." />
         </section>
         <section name="msa" title="Multiple sequence alignment (MSA) options" expanded="true">
             <param argument="--kmer" type="integer" min="20" max="45" value="32" label="k-mer size" help="The k-mer size used for sequence partitioning (default = 32)" />