Mercurial > repos > iuc > ucsc_fatovcf

annotate test-data/out2.vcf @ 0:78df8fc2b3ab draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/fatovcf commit 16910aa7b33e5ff73430be1ca9d7727f4ea5786a
author iuc
date Wed, 11 Jan 2023 13:14:29 +0000
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78df8fc2b3ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/fatovcf commit 16910aa7b33e5ff73430be1ca9d7727f4ea5786a
iuc
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1 ##fileformat=VCFv4.2
78df8fc2b3ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/fatovcf commit 16910aa7b33e5ff73430be1ca9d7727f4ea5786a
iuc
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2 ##reference=test-data/input.fa:sample3
78df8fc2b3ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/fatovcf commit 16910aa7b33e5ff73430be1ca9d7727f4ea5786a
iuc
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3 ##source=faToVcf test-data/input.fa out-test.vcf
78df8fc2b3ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/fatovcf commit 16910aa7b33e5ff73430be1ca9d7727f4ea5786a
iuc
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diff changeset
4 #CHROM POS ID REF ALT QUAL FILTER INFO
78df8fc2b3ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/fatovcf commit 16910aa7b33e5ff73430be1ca9d7727f4ea5786a
iuc
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diff changeset
5 sample1 3 R3R R * . . AC=0;AN=0
78df8fc2b3ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/fatovcf commit 16910aa7b33e5ff73430be1ca9d7727f4ea5786a
iuc
parents:
diff changeset
6 sample1 5 A5G A G . . AC=1;AN=2
78df8fc2b3ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/fatovcf commit 16910aa7b33e5ff73430be1ca9d7727f4ea5786a
iuc
parents:
diff changeset
7 sample1 8 G8A G A . . AC=1;AN=2
78df8fc2b3ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/fatovcf commit 16910aa7b33e5ff73430be1ca9d7727f4ea5786a
iuc
parents:
diff changeset
8 sample1 11 T11G T G . . AC=1;AN=2