Mercurial > repos > iuc > ucsc_fatovcf

annotate test-data/out2.vcf @ 4:98c227b9be71 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/fatovcf commit c43ec89967af3f0e87740c74cfac048e4e7f62b9
author iuc
date Wed, 25 Jun 2025 09:48:05 +0000
parents 78df8fc2b3ab
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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78df8fc2b3ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/fatovcf commit 16910aa7b33e5ff73430be1ca9d7727f4ea5786a
iuc
parents:
diff changeset
1 ##fileformat=VCFv4.2
78df8fc2b3ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/fatovcf commit 16910aa7b33e5ff73430be1ca9d7727f4ea5786a
iuc
parents:
diff changeset
2 ##reference=test-data/input.fa:sample3
78df8fc2b3ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/fatovcf commit 16910aa7b33e5ff73430be1ca9d7727f4ea5786a
iuc
parents:
diff changeset
3 ##source=faToVcf test-data/input.fa out-test.vcf
78df8fc2b3ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/fatovcf commit 16910aa7b33e5ff73430be1ca9d7727f4ea5786a
iuc
parents:
diff changeset
4 #CHROM POS ID REF ALT QUAL FILTER INFO
78df8fc2b3ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/fatovcf commit 16910aa7b33e5ff73430be1ca9d7727f4ea5786a
iuc
parents:
diff changeset
5 sample1 3 R3R R * . . AC=0;AN=0
78df8fc2b3ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/fatovcf commit 16910aa7b33e5ff73430be1ca9d7727f4ea5786a
iuc
parents:
diff changeset
6 sample1 5 A5G A G . . AC=1;AN=2
78df8fc2b3ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/fatovcf commit 16910aa7b33e5ff73430be1ca9d7727f4ea5786a
iuc
parents:
diff changeset
7 sample1 8 G8A G A . . AC=1;AN=2
78df8fc2b3ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/fatovcf commit 16910aa7b33e5ff73430be1ca9d7727f4ea5786a
iuc
parents:
diff changeset
8 sample1 11 T11G T G . . AC=1;AN=2