Mercurial > repos > iuc > ucsc_mafaddirows

changeset 1:022d4e4eaa45 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit 09c8e251f8309b85d189c8052dfbc7b8e108976a
author iuc
date Fri, 27 Jun 2025 13:23:46 +0000
parents d777f5d844dd
children 6ff835295abe
files test-data/componentFilter.txt test-data/filter_in.maf test-data/malformed.maf test-data/speciesFilter.txt
diffstat 4 files changed, 68 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/componentFilter.txt	Fri Jun 27 13:23:46 2025 +0000
@@ -0,0 +1,3 @@
+human.chr1
+mouse.chr1
+dog.chr1
\ No newline at end of file
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/filter_in.maf	Fri Jun 27 13:23:46 2025 +0000
@@ -0,0 +1,32 @@
+##maf version=1 scoring=example
+a score=1000.0
+s human.chr1  100 10 + 1000 ACGTACGTAC
+s mouse.chr1  200 10 + 2000 ACGTACGTAC
+s dog.chr1    300 10 + 3000 ACGTACGTAC
+
+a score=500.0
+s human.chr2  150 5 + 1000 ACGTA
+s mouse.chr2  250 5 + 2000 ACGT-
+
+a score=200.0
+s human.chr3  200 15 + 1000 ACGTACGTACGTACG
+s cat.chr3    350 15 + 4000 ACGTACGTACGTACG
+s dog.chr3    450 15 + 5000 ACGTACGTACGTACG
+s rat.chr3    550 15 + 6000 ACGTACGTACGTACG
+
+a score=50.0
+s human.chr4  110 10 + 1000 ACGTACGTAC
+s mouse.chr4  210 10 + 2000 ACGTACGTAC
+
+a score=3000.0
+s human.chr5  105 10 + 1000 ACGTACGTAC
+s mouse.chr5  205 10 + 2000 ACGTACGTAC
+s dog.chr5    305 10 + 3000 ACGTACGTAC
+s cat.chr5    405 10 + 4000 ACGTACGTAC
+s rat.chr5    505 10 + 5000 ACGTACGTAC
+s cow.chr5    605 10 + 6000 ACGTACGTAC
+
+a score=600.0
+s human.chr6  100 10 + 1000 ACGTACGTAC
+s mouse.chr6  200 10 + 2000 ACGTACGTAC
+s dog.chr6    300 10 + 3000 ACGTACGTAC
\ No newline at end of file
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/malformed.maf	Fri Jun 27 13:23:46 2025 +0000
@@ -0,0 +1,32 @@
+##maf version=1 scoring=example
+a score=1000.0
+s human.chr1  100 10 + 1000 ACGTACGTAC
+s mouse.chr1  200 10 + 2000 ACGTACGTAC
+s dog.chr1    300 10 + 3000 ACGTACGTAC
+
+a score=500.0
+s human.chr2  150 5 + 1000 ACGTA
+s mouse.chr2  250 5 + 2000 ACGT-
+
+a score=200.0
+s human.chr3  200 15 + 1000 ACGTACGTACGTACG
+s cat.chr3    350 15 + 4000 ACGTACGTACGTACG
+s dog.chr3    450 15 + 5000 ACGTACGTACGTACG
+s rat.chr3    550 15 + 6000 ACGTACGTACGTACG
+
+a score=50.0
+s human.chr4  110 10 + 1000 ACGTACGTAC
+s mouse.chr4  210 10 + 2000 ACGTACGTAC
+
+a score=3000.0
+s human.chr5  105 10 + 1000 ACGTACGTAC
+s mouse.chr5  205 10 + 2000 ACGTACGTAC
+s dog.chr5    305 10 + 3000 ACGTACGTAC
+s cat.chr5    405 10 + 4000 ACGTACGTAC
+s rat.chr5    505 10 + 5000 ACGTACGTAC
+s cow.chr5    605 10 + 6000 ACGTACGTAC
+
+a score=600.0
+s human.chr6  100 10 + 1000 ACGTACGTAC
+s mouse.chr6  200 10 + 2000 ACGTACGTAC
+s dog.chr6    
\ No newline at end of file
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/speciesFilter.txt	Fri Jun 27 13:23:46 2025 +0000
@@ -0,0 +1,1 @@
+dog
\ No newline at end of file