Mercurial > repos > iuc > ucsc_netsyntenic
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc_tools/ucsc_netsyntenic commit 303002db06287fb25306020c4391626842f52162
| author | iuc |
|---|---|
| date | Sun, 22 Sep 2024 07:27:25 +0000 |
| parents | d2039064b27d |
| children |
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##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91 ##gapPenalties=axtChain O=400 E=30 net hg38.chr20:10004760-11615810 1611050 fill 0 1582298 mm39.chr2:136351215-137822786 + 0 1469837 id 1 score 19768454 ali 703298 qDup 738 type top gap 624 34 mm39.chr2:136351215-137822786 + 756 0 gap 1118 244 mm39.chr2:136351215-137822786 + 1154 131 gap 1378 44 mm39.chr2:136351215-137822786 + 1301 0 gap 1445 35 mm39.chr2:136351215-137822786 + 1315 0 gap 1554 65 mm39.chr2:136351215-137822786 + 1382 0 gap 2551 32 mm39.chr2:136351215-137822786 + 2297 0 gap 2982 16019 mm39.chr2:136351215-137822786 + 2686 10041 gap 20356 36 mm39.chr2:136351215-137822786 + 14299 0 gap 20578 3032 mm39.chr2:136351215-137822786 + 14468 4563 gap 24210 31 mm39.chr2:136351215-137822786 + 19623 0 gap 24309 39 mm39.chr2:136351215-137822786 + 19672 0 gap 24355 40 mm39.chr2:136351215-137822786 + 19679 0 gap 24402 99 mm39.chr2:136351215-137822786 + 19686 0 gap 25717 7362 mm39.chr2:136351215-137822786 + 20809 6647 gap 34951 30 mm39.chr2:136351215-137822786 + 29563 0 gap 35426 36 mm39.chr2:136351215-137822786 + 30101 0 gap 35970 139 mm39.chr2:136351215-137822786 + 30783 175 gap 36513 29 mm39.chr2:136351215-137822786 + 31387 0 gap 36633 26 mm39.chr2:136351215-137822786 + 31481 0 gap 37430 89 mm39.chr2:136351215-137822786 + 32201 2185 gap 37858 25 mm39.chr2:136351215-137822786 + 34718 0 gap 37936 53 mm39.chr2:136351215-137822786 + 34774 0 gap 38902 306 mm39.chr2:136351215-137822786 + 36008 43 gap 39215 27 mm39.chr2:136351215-137822786 + 36058 0 gap 41159 25 mm39.chr2:136351215-137822786 + 37843 0 gap 41227 25 mm39.chr2:136351215-137822786 + 37865 0 gap 41275 31 mm39.chr2:136351215-137822786 + 37884 0 gap 41319 31 mm39.chr2:136351215-137822786 + 37897 0 gap 41367 54 mm39.chr2:136351215-137822786 + 37914 0 gap 41436 27 mm39.chr2:136351215-137822786 + 37929 0 gap 41478 45 mm39.chr2:136351215-137822786 + 37944 0 gap 41547 37 mm39.chr2:136351215-137822786 + 37966 0 gap 41591 40 mm39.chr2:136351215-137822786 + 37973 0 gap 42435 26 mm39.chr2:136351215-137822786 + 38729 0 gap 42576 1296 mm39.chr2:136351215-137822786 + 38843 855 gap 45458 320 mm39.chr2:136351215-137822786 + 41246 46 gap 46683 179 mm39.chr2:136351215-137822786 + 42141 838 gap 47509 322 mm39.chr2:136351215-137822786 + 43595 273 gap 48058 32 mm39.chr2:136351215-137822786 + 44104 0 gap 48887 263 mm39.chr2:136351215-137822786 + 44844 0 gap 51209 3230 mm39.chr2:136351215-137822786 + 46829 2230 gap 55461 66 mm39.chr2:136351215-137822786 + 49980 28 gap 56270 85 mm39.chr2:136351215-137822786 + 50686 0 gap 56362 40 mm39.chr2:136351215-137822786 + 50693 0 gap 56437 150 mm39.chr2:136351215-137822786 + 50723 0 gap 59219 3194 mm39.chr2:136351215-137822786 + 53646 5898 gap 62677 34 mm39.chr2:136351215-137822786 + 59774 0 gap 63386 27 mm39.chr2:136351215-137822786 + 60511 0 gap 63612 2850 mm39.chr2:136351215-137822786 + 60710 3746 gap 69184 27 mm39.chr2:136351215-137822786 + 67198 0 gap 70060 69 mm39.chr2:136351215-137822786 + 68603 21 gap 70553 48 mm39.chr2:136351215-137822786 + 69020 0 gap 70619 58 mm39.chr2:136351215-137822786 + 69031 0 gap 70996 115 mm39.chr2:136351215-137822786 + 69363 222 gap 73890 600 mm39.chr2:136351215-137822786 + 72609 3 gap 74762 138 mm39.chr2:136351215-137822786 + 72898 323 gap 75048 62 mm39.chr2:136351215-137822786 + 73365 26 gap 76182 2122 mm39.chr2:136351215-137822786 + 74423 5251 gap 78775 38 mm39.chr2:136351215-137822786 + 80091 0 gap 78818 42 mm39.chr2:136351215-137822786 + 80096 0 gap 83460 2168 mm39.chr2:136351215-137822786 + 86438 551 fill 84589 137 mm39.chr2:136351215-137822786 + 87751 136 id 6 score 6961 ali 136 qOver 0 qFar 762 qDup 136 type syn gap 86228 139 mm39.chr2:136351215-137822786 + 87592 0 gap 87584 419 mm39.chr2:136351215-137822786 + 88619 553 fill 87669 167 mm39.chr2:136351215-137822786 + 87101 168 id 7 score 6916 ali 167 qOver 0 qFar 1350 qDup 168 type syn gap 89100 763 mm39.chr2:136351215-137822786 + 90203 1433 gap 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mm39.chr2:136351215-137822786 + 1249915 19 gap 1300583 32 mm39.chr2:136351215-137822786 + 1250235 0 gap 1301633 53 mm39.chr2:136351215-137822786 + 1251263 0 gap 1302062 40 mm39.chr2:136351215-137822786 + 1251574 0 gap 1303415 85 mm39.chr2:136351215-137822786 + 1252829 0 gap 1304248 850 mm39.chr2:136351215-137822786 + 1253547 1414 gap 1305447 71 mm39.chr2:136351215-137822786 + 1255293 111 gap 1307603 51 mm39.chr2:136351215-137822786 + 1257433 0 gap 1307808 88 mm39.chr2:136351215-137822786 + 1257590 6774 gap 1310092 35 mm39.chr2:136351215-137822786 + 1266565 0 gap 1310341 126 mm39.chr2:136351215-137822786 + 1266805 392 gap 1310890 26 mm39.chr2:136351215-137822786 + 1267740 0 gap 1311173 46 mm39.chr2:136351215-137822786 + 1267964 291 gap 1312324 6336 mm39.chr2:136351215-137822786 + 1269294 2741 gap 1318892 25 mm39.chr2:136351215-137822786 + 1272250 0 gap 1320046 27 mm39.chr2:136351215-137822786 + 1273374 0 gap 1320447 31 mm39.chr2:136351215-137822786 + 1273655 0 gap 1320632 5829 mm39.chr2:136351215-137822786 + 1273797 2138 gap 1327703 743 mm39.chr2:136351215-137822786 + 1277092 947 gap 1328597 40 mm39.chr2:136351215-137822786 + 1278194 0 gap 1328844 36 mm39.chr2:136351215-137822786 + 1278395 0 gap 1328986 142 mm39.chr2:136351215-137822786 + 1278503 0 gap 1331570 91 mm39.chr2:136351215-137822786 + 1281091 0 gap 1331668 38 mm39.chr2:136351215-137822786 + 1281098 0 gap 1331714 79 mm39.chr2:136351215-137822786 + 1281106 0 gap 1331873 56 mm39.chr2:136351215-137822786 + 1281149 0 gap 1332520 93 mm39.chr2:136351215-137822786 + 1281766 339 gap 1333807 584 mm39.chr2:136351215-137822786 + 1283328 709 gap 1335237 38 mm39.chr2:136351215-137822786 + 1284847 0 gap 1335294 30 mm39.chr2:136351215-137822786 + 1284866 0 gap 1336304 31 mm39.chr2:136351215-137822786 + 1285764 0 gap 1338125 817 mm39.chr2:136351215-137822786 + 1287486 1866 gap 1339426 1710 mm39.chr2:136351215-137822786 + 1289798 2713 gap 1341333 72 mm39.chr2:136351215-137822786 + 1292721 0 gap 1341685 45 mm39.chr2:136351215-137822786 + 1292979 0 gap 1342018 33 mm39.chr2:136351215-137822786 + 1293233 0 gap 1342998 2091 mm39.chr2:136351215-137822786 + 1294152 3767 gap 1345381 34 mm39.chr2:136351215-137822786 + 1298163 0 gap 1346208 31 mm39.chr2:136351215-137822786 + 1298954 0 gap 1346256 28 mm39.chr2:136351215-137822786 + 1298971 0 gap 1347988 26 mm39.chr2:136351215-137822786 + 1300799 0 gap 1348232 3203 mm39.chr2:136351215-137822786 + 1301011 3241 gap 1351789 85 mm39.chr2:136351215-137822786 + 1304578 160 gap 1352253 125 mm39.chr2:136351215-137822786 + 1305127 90 gap 1353167 7148 mm39.chr2:136351215-137822786 + 1305996 1295 gap 1361398 46 mm39.chr2:136351215-137822786 + 1308351 0 gap 1361460 246 mm39.chr2:136351215-137822786 + 1308367 23 gap 1362329 993 mm39.chr2:136351215-137822786 + 1308965 2607 gap 1364304 2862 mm39.chr2:136351215-137822786 + 1312546 3548 gap 1368418 1307 mm39.chr2:136351215-137822786 + 1317310 686 gap 1370162 43 mm39.chr2:136351215-137822786 + 1318427 0 gap 1372654 47943 mm39.chr2:136351215-137822786 + 1320773 17278 gap 1421052 145 mm39.chr2:136351215-137822786 + 1338498 332 gap 1422033 2717 mm39.chr2:136351215-137822786 + 1339699 4110 gap 1427395 5175 mm39.chr2:136351215-137822786 + 1346347 5369 gap 1433633 93 mm39.chr2:136351215-137822786 + 1352871 298 gap 1434134 111 mm39.chr2:136351215-137822786 + 1353530 217 gap 1434461 2733 mm39.chr2:136351215-137822786 + 1353969 1186 gap 1437628 37 mm39.chr2:136351215-137822786 + 1355597 0 gap 1437783 1449 mm39.chr2:136351215-137822786 + 1355713 806 gap 1440538 39 mm39.chr2:136351215-137822786 + 1358043 0 gap 1440785 365 mm39.chr2:136351215-137822786 + 1358264 790 gap 1441544 44 mm39.chr2:136351215-137822786 + 1359428 0 gap 1442262 526 mm39.chr2:136351215-137822786 + 1360054 38 gap 1444102 31 mm39.chr2:136351215-137822786 + 1361464 0 gap 1444167 250 mm39.chr2:136351215-137822786 + 1361498 41 gap 1444441 39 mm39.chr2:136351215-137822786 + 1361563 0 gap 1444870 1672 mm39.chr2:136351215-137822786 + 1361942 1783 gap 1447273 2006 mm39.chr2:136351215-137822786 + 1364421 1243 gap 1450029 182 mm39.chr2:136351215-137822786 + 1366301 681 gap 1450265 29 mm39.chr2:136351215-137822786 + 1367036 0 gap 1452073 96 mm39.chr2:136351215-137822786 + 1368656 56 gap 1453198 116 mm39.chr2:136351215-137822786 + 1369721 658 gap 1455237 32 mm39.chr2:136351215-137822786 + 1372261 0 gap 1456585 113 mm39.chr2:136351215-137822786 + 1373570 103 gap 1457691 23494 mm39.chr2:136351215-137822786 + 1374612 3141 gap 1481699 420 mm39.chr2:136351215-137822786 + 1378267 103 gap 1482882 54 mm39.chr2:136351215-137822786 + 1379070 6760 gap 1483405 108 mm39.chr2:136351215-137822786 + 1386252 0 gap 1484975 138 mm39.chr2:136351215-137822786 + 1387753 0 gap 1485167 34 mm39.chr2:136351215-137822786 + 1387807 0 gap 1486343 34 mm39.chr2:136351215-137822786 + 1388940 0 gap 1486583 36 mm39.chr2:136351215-137822786 + 1389148 0 gap 1487061 305 mm39.chr2:136351215-137822786 + 1389543 288 gap 1487709 2628 mm39.chr2:136351215-137822786 + 1390167 7443 gap 1491329 160 mm39.chr2:136351215-137822786 + 1398570 0 gap 1491631 30 mm39.chr2:136351215-137822786 + 1398714 0 gap 1492139 33 mm39.chr2:136351215-137822786 + 1399167 0 gap 1492585 168 mm39.chr2:136351215-137822786 + 1399606 15 gap 1493569 32 mm39.chr2:136351215-137822786 + 1400356 0 gap 1494272 1132 mm39.chr2:136351215-137822786 + 1400998 1095 gap 1497222 12262 mm39.chr2:136351215-137822786 + 1404337 3531 gap 1509768 47 mm39.chr2:136351215-137822786 + 1408127 0 gap 1509964 46 mm39.chr2:136351215-137822786 + 1408270 0 gap 1510542 114 mm39.chr2:136351215-137822786 + 1408745 218 gap 1510777 29 mm39.chr2:136351215-137822786 + 1409089 0 gap 1510814 52 mm39.chr2:136351215-137822786 + 1409097 0 gap 1511404 2820 mm39.chr2:136351215-137822786 + 1409618 3382 gap 1514347 52 mm39.chr2:136351215-137822786 + 1413117 0 gap 1514778 64 mm39.chr2:136351215-137822786 + 1413469 0 gap 1518492 11358 mm39.chr2:136351215-137822786 + 1417027 4062 gap 1531861 403 mm39.chr2:136351215-137822786 + 1423156 106 fill 1532147 14 mm39.chr2:136351215-137822786 + 1423235 14 id 24 score 1030 ali 14 qOver 14 qFar 0 qDup 0 type syn gap 1533327 975 mm39.chr2:136351215-137822786 + 1424248 2687 gap 1535670 33 mm39.chr2:136351215-137822786 + 1429649 0 gap 1535714 39 mm39.chr2:136351215-137822786 + 1429660 0 gap 1535885 41 mm39.chr2:136351215-137822786 + 1429766 0 gap 1536303 872 mm39.chr2:136351215-137822786 + 1430109 1075 gap 1537749 160 mm39.chr2:136351215-137822786 + 1431749 352 gap 1539916 7364 mm39.chr2:136351215-137822786 + 1434009 7136 gap 1547578 32 mm39.chr2:136351215-137822786 + 1441441 0 gap 1549961 46 mm39.chr2:136351215-137822786 + 1443729 0 gap 1550860 34 mm39.chr2:136351215-137822786 + 1444574 0 gap 1550906 36 mm39.chr2:136351215-137822786 + 1444586 0 gap 1550989 324 mm39.chr2:136351215-137822786 + 1444628 106 gap 1551336 58 mm39.chr2:136351215-137822786 + 1444757 0 gap 1551805 33 mm39.chr2:136351215-137822786 + 1445175 0 gap 1552129 7140 mm39.chr2:136351215-137822786 + 1445444 2605 gap 1559776 28 mm39.chr2:136351215-137822786 + 1448512 0 gap 1561131 6202 mm39.chr2:136351215-137822786 + 1449795 6308 gap 1567502 435 mm39.chr2:136351215-137822786 + 1456265 0 gap 1569600 3679 mm39.chr2:136351215-137822786 + 1457951 497 gap 1575570 982 mm39.chr2:136351215-137822786 + 1460605 3099 gap 1578973 27 mm39.chr2:136351215-137822786 + 1466272 0 gap 1579008 26 mm39.chr2:136351215-137822786 + 1466280 0 gap 1579199 34 mm39.chr2:136351215-137822786 + 1466458 0 gap 1579239 96 mm39.chr2:136351215-137822786 + 1466464 0 gap 1579670 32 mm39.chr2:136351215-137822786 + 1466774 0 gap 1579830 137 mm39.chr2:136351215-137822786 + 1466887 158 gap 1580158 139 mm39.chr2:136351215-137822786 + 1467268 277 gap 1581050 27 mm39.chr2:136351215-137822786 + 1468619 0 gap 1581711 159 mm39.chr2:136351215-137822786 + 1469244 221